jgi.p|Nanoce1779_2|546041, gene_8293 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|546041
Unique Namegene_8293
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_23:284113..291543 -

Link to JBrowse

Properties
Property NameValue
TranscriptId546127
ProteinId546041
Product nameAAA domain (dynein-related subfamily)-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:284113..291543 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016887ATPase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL038ncniL038Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01160NO29G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546041mRNA_8293-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546041mRNA_8293Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|546041

>mRNA_8293-protein ID=mRNA_8293-protein|Name=jgi.p|Nanoce1779_2|546041|organism=Nannochloropsis oceanica|type=polypeptide|length=2001bp
MLARRRLFCMSGHLSRRPLSSPSSAPSGGRLIDLGGGIQIVKRQPKNPEL
VPKGYLGDMSQLSEETLAHLRWMAQKDLLGQDIFLLGGPGPVRRWLALSY
CELTGREVDFLSLSRDTTESDLKQRREILNGGAYFVDQPPVRAAVGGRVL
ILEGIEKAERNVLPTLNNLLEDRSMGLEDGRFIMKASAYDKLDSDLQAHR
LRRCHPDFRVMALGLPVPPYKGRTLDPPLRSRFQCRVVEPELTGADCLSR
PPASILLPWSPPPSLSSSLHLSPPPTNPKIALFVETLRQVRLNGGGEGGS
ERGRFGSFPIFPTWVLPHTHHLLKAFPGCGQGQALARVYPFLYQYQQQQQ
QQKGKEMKNSTSSSSSSDNDSNSSGLVGLVRKLGVDNLSVGPPFQGVRPL
LPPPPPPPSTAAPGAFFVETPTTLATLTAMLQEHSLGRDICLLGGKGVGK
SKLAELFCHRLGYRPEIFPMFKDMTPRDLVQRRGTDERGNTRWEDSPLVK
AAREGVVVVLDGVHRLHTDTLSTLQRVCVDREMELMDGARLVKGGGGEGE
RGEEEGGGGRGREGGLTEGAQRILPLHPSFRIIALGEVEVPKSPSSLPAS
SSTSYSFSSPAPWLHQDVLPLFSWLVLPPLSSVEHDLVLRRSFPSLPPSL
RRTLLDIEAGLSNKEEEGEELSLSTRQLMRLARSLAVMKEGGRERGREAL
SGLVHDALMTAFATGQVRDVVEDVLRNVGLSSSSSSSSHSRSHSSNWSSA
KTVRIGDVEARRRTPLRPDLVPHPSPFFENPRHVQLLQRLLLDGVRGEKA
MLLVGNQGVGKNKLVDRLLQLLNAEREYIQLHRDTTLHSLTLLPSLQDGK
IVHVDSPLIKALKHGRVLVIDEADKAPAEVVVLLKSLVEDGYMLLPDGRK
VVRGDSALPPSLPPSTPGGGAAAPAPSYNNNINSSIPPGPLPNITIHPSF
RLLVLANRPGYPFLGNDFFSLVGDVFSSHSIANPDLPSEIALLSSYAPSL
PASLLHCLACCFSDLRKLNEEGLLSYPYSSREAVAVAKHMEAFPQDGLGR
ALTNILEFDSFLNQETRNLIENVFRRRGVPLSLEMGREGGREGLRGMGNL
PAVELGEVRILKGGKVMGGWEEEEGGEGGVEVRREGWEEGKGKDGGRKRW
RVQGVGWGKWEMESSRLKKFSEEVGRLSLMGGGGEGREGGGGKSMVVTRE
GRREDVHVLMDGPLRVMSLYGIGGGGEGGERGGSVEGGRGEARRVELLPS
PSSSNTENHIIVIFPRKKYAVVLPACGGERELSAQAQRIDLPYFPSSSSS
SSSSSSSSSSTSSWGGQTASAWRIVMGGGSSIGSSSSTSSSTSSGLIEVV
EESKGTSRLLYFTKGGSSLTVMDLEIGEEEKERWPAGGEKGGKKGRRNTT
HVFLKDTQTGSPLRIERVGVTPTGELIVWSGGGGEEGEKQEAVYQHLRAL
TRLGHLISVLSATPSNNTHLDSSSSSSSSSSSSSSSSSATLELTNPISNT
SKTITISSLPSFSSSSSRPRRSASPPLRVLAMEELGGREGGKEGGGRVVI
LLNDDTLRIIETEEGALTRQLQEWKMMFPGGQQQQQQQQQQQQQPQQREG
GKESIPKTGLNKPKHGKEDEKNEEHVGGNTWAGGVGGSDTAGLGGRGGPY
RLDKGHVVHQVSEEMKNQVGEKAREEAARMGREALAQRLREIGMSEGDWS
LYEGIMKRVNQQVGQLREILREGGRKGKDRGKERVWRRNQAQGELDDSKL
VDGMAGERLVFKRRADVEEEKDESWKGRRKDGETKGKKKRRMLFVMDTSG
SMYRFNGEDGRLDRMLEVATMIMESFDYDEGGREGEDDDEVEYAIRAHSG
DSANLSLIEFGKPPKTRKDKLAVLEKMAAHAQYCLAGDNTLRATEEAAAE
LAAHQQQQIGEGGEGGSYSSYLFVVSDANFERYRIPPRRLGEALVRHGAS
VRGHVFLIASLGEEAKEAVRQMPVGRAHLCLEVAALPRAMKKIFVEELNR
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Synonyms
Publications