jgi.p|Nanoce1779_2|655281, gene_8239 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|655281
Unique Name	gene_8239
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_23:152549..159060 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	655367
ProteinId	655281
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:152549..159060 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL038	ncniL038	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO29G00660	NO29G00660	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655281	mRNA_8239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|655281	mRNA_8239	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|655281

>mRNA_8239-protein ID=mRNA_8239-protein|Name=jgi.p|Nanoce1779_2|655281|organism=Nannochloropsis oceanica|type=polypeptide|length=1502bp
MAQADGDPPSPSPLSPQPPPAPPTTLPTFHDWQRNPNPLSLALLRQDREK
SSAFAVDMLNWLRDESAPLLNPRAATAAAASAAATAAAAAAAASAATPPY
SAEGRGGGGGGGGATPGSVSGIRTPISAFAKHRGRECRPPTHQQSSPPPS
PCHPLPTPPKPPHQSSSHLVAPPPSCPPSPPPPPPFAEADASSEAADASA
TAATAASAPPPPPPLLDPEPRHLFTDADFPALDDDGGGGRGGGRGRRGGR
GGGEGREGGRDGNETPQSVTSTSSTTSSESDHHHQTKGIKARRRIRPTSV
FVPPSTTPLATSSFPFSLPSSSSLHASALTQTLLPPSPPLFTTATAASTT
AAAAAAGGGSGGDAPPPPLSDGDLTHLPNAPPIMLPPSRRTRTSTAAAAV
VAHETASAATAPPTAAPAAATDAEASSAFLTPVKKPTPARTAAADAPSSL
STSAPTHGHLVLRPPPPSFHARSRSVKTDTPSLTSPSLALLSPPTPSCPS
TTRPSLPPSLSSRLLLIAKTYAQVLLLRLAPKLATELHLLARLLTVHEDL
LLLPPSLPPSLPPSTHGWAPSTPPSTSLSCPSSFPSSSSSSLFSSGHACN
FLAAHTLSNLQPLLLSLPPSLLSLLLSPPALARHVPSLLPSLTLLRTGTD
AMKEEEDGREGGAAFPSFQPDEARDAFLLLGREGGRGGGQAGGVDVALPF
VEERDARHWYNGSAWAKLLYKRQEEARDAFLLLLREWEEEASQYLDRRRV
ERWIGDVLGGEGGRARRVLLLLLPWSMPWFAEFWVATLVKVGEGGGGGGG
GGGREEGWMGALTAGGGGGGGKGEGEEGKVGSGSGGGKGGGGGGRRGGGG
GGGGGGGGGGGGGGEIHLLQGRIRGRGVGGPSASLGASSKRLSLASPSTS
SSTSSNRGKGGAATNTTASSSSDNGRSRSSSTSSSSKTNNLGETTEAESG
EWKEGGREGGRVATLKMLGRFLGLLLFGADWWGTANGSRDSSSSSSSGGG
SSSSIVSTNNNRREGGREEEVVRMMRWDPVGRETAYFKQLVNMLRGCYWR
LVEVEEGEGGREGGSGGGLRGREGRRRNAFFLSCELEQLFEELEEGVGKE
GGKEGGRTPMRKKVRPYRVPSVEELQLQQQQQQQQQRWNNGSEDAHRTAV
EPIVEEVVLRQQQRQQQRQQQQQRLLAAKERAMALSSATSAAPTPAISPS
SFPPSSSSSSWLITTQKHLHRLRVGMEGAPFLLPSDLQQFLPQLLSILME
GGREERKEEVVMGREGGMEERKEEEIKDLMVTLGAVLSFVLHAAQAMRDG
EGEGGANGWCIQEQEEKENEQQRQQQQQLYKTLLLLQKCLLALPPFLSHI
LNMSHGTQRWIQRLIFNFAMVDEEEGDDDEDEEKGGREEREGWNMVRLTA
EILMVVSDWWAALLGAGAVTPLIVEEAWLELLRSPALCPLSFPPCPVEKK
EYGVGGELQQQQQQQQQEWRAAARRLVENYDRSAMKNHFMCFGRLRAAAF
L*

Synonyms

Publications