jgi.p|Nanoce1779_2|673162, gene_8012 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673162
Unique Namegene_8012
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_22:432822..439525 +

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Properties
Property NameValue
TranscriptId673248
ProteinId673162
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:432822..439525 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000701purine-specific mismatch base pair DNA N-glycosylase activity
GO:0004844uracil DNA N-glycosylase activity
GO:0017065single-strand selective uracil DNA N-glycosylase activity
GO:0019104DNA N-glycosylase activity
GO:0043733DNA-3-methylbase glycosylase activity
GO:0016787hydrolase activity
GO:0003824catalytic activity
GO:0004519endonuclease activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006817phosphate ion transport
GO:0006281DNA repair
GO:0006284base-excision repair
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL037ncniL037Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673162mRNA_8012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673162mRNA_8012Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|673162

>mRNA_8012-protein ID=mRNA_8012-protein|Name=jgi.p|Nanoce1779_2|673162|organism=Nannochloropsis oceanica|type=polypeptide|length=862bp
MRRAFTLTVLVAIASLSALSSAADTDKTIFDSNPKTFTCPPFSICVTGPK
GETGDRGPQGETGPQGEKGMQGEQGIQGDQGPEGPTGPMGPRGPPGKTKH
EYYYEPHPHQDKEEYYGEKKGHHDTRKYANAEKGREGGKGNHGWHEGNGE
YEPHYSYGDKKHKKGWKRDDAYDSYEAAKYTKEGKHERGYGGKTHGTGLI
IARAGEGRYCTVQHIAYPTAKGHHSMQQQRQYLRHQQQQQQDRLHEEKKL
NIGEHMKNEGGMAEVILIDDIEDLVSSPKPTSPAKTGGGEENGGRGVGGR
GEGGGGAAAAASTAVFPLKETFEGHADAFHEVSEAEGMAIYSKLVKWYYG
NRRKLPWRGDPPPYGTATTSTDGQGEEEVKRGKKKKTKQKQQQEQEQEGV
GRSKKGSITSFFRPTTLKQEQPPQQQPSSSSPPSSSSPPPESSPSQPLPP
PLPPPTPIPVSPYGTWVSEIMLQQTRVDTVISYYQRWMETFPTIAALAVA
SPEDINRIWAGLGYYRRARLLQQGAQDVMLRFDGELPKTTQELLSISGIG
PYTAGAIASIAFHQPAPLVDGNVLRVLSRLRAIKASPKGSNFIKFAWQAC
AGMVGGREGGREGGSEDGDGRGDPGAFNQGLMELGATAIKKPPKVERLLV
AVLEREGSFLLVKRPEGGLLSAQWEFPSITIVPVAEEEEDKEEGDEEDEE
GREEGREEGREEGREEGLGTKKKKKSAAASTGVKREASPPLPSLSPSPPP
FAVRDMLTQELGLEEEKIEGWEHAGSLVHVFSHVRHEMTLFRSSYKGEEG
PSLTLTTGREIEWMSEGRRNECGVTTGVKKIIALVMKEGGEGERERGREG
GKARGKRKVTG*
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Synonyms
Publications