jgi.p|Nanoce1779_2|176897, gene_7927 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|176897
Unique Namegene_7927
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_22:191218..194175 -

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Properties
Property NameValue
TranscriptId176983
ProteinId176897
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:191218..194175 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0016987sigma factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription, initiation
GO:0006355regulation of transcription, DNA-templated
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL037ncniL037Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO26G01020NO26G01020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176897mRNA_7927-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|176897mRNA_7927Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|176897

>mRNA_7927-protein ID=mRNA_7927-protein|Name=jgi.p|Nanoce1779_2|176897|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp
MGCRPLTAAARSTPTRLLPLLPARHALRAFKNSSSCRPYAHRGGFSCHTG
LPVARSWLLVPIDLSLWLVPSQASLSELLSLPPTNINPDLAPPSPPPKGL
PRHTHEAWGIRQLHCSSVATVATAYTRNMAQKDDAQPPTLQGSTTAQQHQ
QLPHPSCSITTPSGPNPGAHGSRKRQHSMHRISALGACCLVGLASCYTTA
FVLPSGGLSGYSTNRASRHAPHIGSSQHPPSTRTLLEQQRISSGPSFSLS
STANDNAATNTGPVTVAAAAATAAPNPVSAMPIKGIPPRGRPGKDGVPLN
PPNKGSGKAPLRGDEEVDLARKMQVRVAYIRVKYLAREALGRDPTHREWA
DVLGISDKALAEALTAAADAKTTMIRANMRLVMSIVRRYLSRGVQLKDLL
QEGMNGLTRAAEKFDPDRGFKFSTYATWWIKQSVMRAVADQSRVVRLPVH
VHDLLNQIGRAERELSAQLGRQPTEAEIAARVDIPQRKLQFLRERTQHTL
SMDATRPSGGRKSGSGIGDEVRVSDSISDSEPLQDVKADEAYMREQVERL
LDSLNPREADVVKMRYGLVDGQQRTLEEIGVAFRVTRERVRQIEARALHK
IKQPYRTQHHKLRDNGRGGGAATAGKGSSQGHAGSHLSISVFGDFVGAVE
NGNGLKGGGALVVEEEMVVSVRRSTSSTSRSRSSSSSSSSSSSSDNSGST
SKTPVPEACWRKQYRA*
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Synonyms
Publications