jgi.p|Nanoce1779_2|545665, gene_7787 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|545665
Unique Namegene_7787
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_21:328630..332080 -

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Properties
Property NameValue
TranscriptId545751
ProteinId545665
Product nametryptophan--tRNA ligase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:328630..332080 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004830tryptophan-tRNA ligase activity
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006436tryptophanyl-tRNA aminoacylation
GO:0006412translation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL036ncniL036Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL035ncniL035Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01040NO17G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545665mRNA_7787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545665mRNA_7787Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|545665

>mRNA_7787-protein ID=mRNA_7787-protein|Name=jgi.p|Nanoce1779_2|545665|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp
MATPSELRTPQAVTSALIVKGALANVLGFPIGSTTIGTHYSEGHRVRLTV
QIGKAPDPTEAQFIKVAETINALLAANQPVHVLKLPRSQAEETYKKAMYN
RHAVPESVTELTIAYIEGLAFSCTGEAVVASTGLVGSITINKTKFRSAKK
ELEVQYTVEEAVKGSVAVAEANGVALPTSEAIAVLNSDSVRVAADGPVEG
GNGGGAEGDGAGGQVVTPWEVEGDQEIDYDRLIKSFGSMRITEDVVSRIE
RLTGVKCHRFLRRGLFFSHRDLTQLLDMYEKGTKFYLYTGRGPSSESLHL
GHLIPFHFTRWLQAAFDVPLVIQLTDDEKFQFKQGLTLEECHRLAYENAK
DIIACGFNVKKTFIFSDLDYIGHLYPTVLKIQKLVTFNQARGIFGFTESD
SCGKIAFPAVQAAPSFVSSFPVVLGRGRKGGKGGGKEDMACLIPCAIDQD
AYFRMTRDVAPRLGYKKPSLIHSKFFPGLEGKGGKMSASAESSAIYVTDT
AKKIKQKIGRAFSGGQETADLQKELGADLEVDVAYQYLTFFLEDDEELAE
IGREYKAGRMMTGQVKGRLIELLGGMVGEHQERRAAVTDDMLAEFMRVRE
LEF*
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Synonyms
Publications