jgi.p|Nanoce1779_2|531987, gene_7776 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531987
Unique Namegene_7776
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_21:296690..300448 -

Link to JBrowse

Properties
Property NameValue
TranscriptId532073
ProteinId531987
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:296690..300448 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004527exonuclease activity
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL036ncniL036Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL035ncniL035Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO17G01150NO17G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531987mRNA_7776-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531987mRNA_7776Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|531987

>mRNA_7776-protein ID=mRNA_7776-protein|Name=jgi.p|Nanoce1779_2|531987|organism=Nannochloropsis oceanica|type=polypeptide|length=1229bp
MLVGTTSSSPSSCSSSCSSSSFSPSPSFSFSSSTQVNSQGLPPSFTFPPP
RHDLSPAPLPRRRRSSLPGASSSLSSTSLSLLSPSACALLESVGSLKGVG
PAAADALKRMGIRKNLDLLFHLPVGVFDWGSNKLVRELQDGESASVNVKV
VGHTEAEGRRPLTIHCVDEEGSPLDLIFFLNRRNYGSFYTQKKFYPGSVH
RLQGKVSRAKYGDKKMCMSHPEAVKEGGGQGRKEGTVEPLYRLTSGLNAS
KLRDFIQEALRAISPSDPPITKLARAASSSSFPDWLDDSFREAKGWPTFP
EALRQVHNPTGVDGIDACNKARERLAFDELLATQLPTALKRAQDKKDALA
AAAAPATAAAVATAARAVGGDGHLTNPCIQQLPFQMTEGQKRSVSEIWGD
MASHQGRMVRLLQGDVGSGKTVCALLAMLRAVEGGWQAALLSPTEILAFQ
HLKTLGELTKGLKVRVGGKEGGEEEWRPLRIEVLTSSAKKGKARKVLLEE
LASGKIDILVGTHSLLSHEVVFDKLGVTVIDEEHRFGVKQREKLSTDTNV
IYMSATPIPRTLLLTNYGDMEVSRLEEAPARNVKVTTTIFPLTSVGQIAE
RLKKKVLDDSTEKVFWVLPCIEDKEEEGGGADGRGITSVIYRHAALVELL
GKERVGMVHGKMDAESKLKALRDFSAGETNVLVSTSVIEVGVDVPDATVC
IVEHAEYFGLSQLHQLRGRIGRAISGSSNSSGNSSGGETKEYHCVLTYDD
TSPNREKALERLLTLKRTVDGFEIAEQDLRLRGPGEVLGHKQSGHHGFRL
VDLGKHQELLDEAYTLARTYAAVCVRGEEEGGEEAVVMARKLKKEGVETL
LSFFASDANDVGNVSAKVRVVRSGSSSSRNTSGSSSSVSAAAASDGWISA
SPPVDTKKKTHVRASTFSSTRNSTSSSSSSSSSSPSSPLPGWNIITYGDR
YEICTPPPSVDDDDDLELANALNATSLSSPETSLLSTRFSTDDQPIPRME
IDLEKEDVTFIIFDTETTGLKAESDRIIQLAAKAGGEPGDGLIFNRYIDP
GFWIPAKITEITGISNESLFRARAKKFEEVWPEFVEWVNVVRGKKSVVLV
AHNAGFDHKFVMFDLKRGGWDERTFREETHIVGMMDTLPVFRSEELWSRR
KGDGLPGKPNNYRQGTLYRYLLGEELQNAHSAKGDVLGLEALLSHPSVCR
KWRRLGSASVLEMGGWDGARGRNGDLAS*
back to top
Synonyms
Publications