jgi.p|Nanoce1779_2|165546, gene_7666 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|165546
Unique Name	gene_7666
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_21:19307..24159 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	165632
ProteinId	165546
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:19307..24159 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL035	ncniL035	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO17G02210	NO17G02210	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|165546	mRNA_7666-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|165546	mRNA_7666	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|165546

>mRNA_7666-protein ID=mRNA_7666-protein|Name=jgi.p|Nanoce1779_2|165546|organism=Nannochloropsis oceanica|type=polypeptide|length=1408bp
MGAKRSSSVTRGAGIGGDGSSSGRPRKRQTTRALSTGDAQQQQQDGEQKA
VIPIPGLPGGNCGEGEEPLVNLFGDDLEIFDMDSDFDHMLYEGEEKKKMK
EKKEERLQEQQLRDRGGGAMSDVFLYDLEAIGALDGQGALPVCLPPSTSS
SLPSSSSSSSRPPASVVSTTATATSQTSSLSPEHAVFTSSHPPTQPLQSL
VDLSPSVSADTVAAGATTAPVPAWAQLPSQPASAFVSSATLPADGTSQQQ
QRQQQQQQQQQQQQQQHQQQHLSPYSPSKAPPPQQQRGEAGLTRTTTTTS
ISISSSSSNVVKRELSSLLRGIPGVIMELFKDGVRFGLGGSQQQQQHQQQ
QQALSVKKKGGEWLGPLQPYLASVREMLRRIDHLALLPLEVLALLPSPPR
MKKGAQVLVECRDYRPLLLQEHAHPSSSLPSSSTVVRVSRALLQIPGPIL
QHDLPLPDTSTSSGMPSAAAFAAAAAACVGKKGGVNKEQQSKSALYAGGK
GGGKKAVISVGGGVGGGGGGGGGGGGRGVTTVAGLVAQAQTEQEEAMQLE
QKMLQAAFPGPDVRVIGDGGEGVREGGREGGRDVIQPMMPLSSQSITQRG
FVDSSSSNSSSQGMPYKRHHYRQLEPHPSILDTRPSLPPSLPPPRSLPSP
GPGDDMTFIQHQYAPSPRSEGGVKGVINGEEDDLQIDWADLQDLFSEGDP
PPPASSYTTSPSTHAAASTGAGMHGGGDVRPSPSISRQSSPSHPPTFEES
LSQTSMLSNISSSHSINSSSSNSSSSKRPDAYVKKTRQSKKSKIHGQPGI
SKKAAAAAAKAGAFAAAAGEGVRDSECIGGPPSLPSLSPSLSPPFASLPC
KHRSVTGASAGYPPSLFLASKRPFLPSLPPSLSSTTTSSTLAVAVAVAKA
QDAFRLSSIHSLLQIQESALRAGTSLLHQHHQQQRQLQQDQEGRQRQAIP
NVAGRAFSLGPALNVEQVISKREREKSDQGHTQRHPFPPQQNQQILASSA
AGHAALTNASIDAPHPSEMPTQKKQQQQQHRQGAPHSGAMPIEKQQQQQQ
HSSSGSSSSSSKHQLPWHCGLRPVSVSRVYKCSFNNHIHSYVPLLPPLPP
SLLLITPLLIRKMRHHPYHMRSSNSNSSSSSSSSSRTYNSRAFLLHPFLA
QIPSPLSLPASCPHPPLSLLASCPHPPPSRHNSTSSASIINRLTIIINNS
SCSSRTHSLWGWSKPDASSSFSHYSIRQKRERPQEEEEEEQGEEEDRQGR
CRLTTSNLCSSSSVNSSSSGNRCYVESQPYLLSLRANNQWMGYNFNNNNN
NNNNNNNNENNNNNNNYYYSSRSSSRSNSRSNSSSCHLPLTISSNTSNNG
TGDSSSSSYMFCSSSSSSSSSSSSSSSSTNGSVNLCIYMRAPVQKNVKIK
KDELYNI*

Synonyms

Publications