jgi.p|Nanoce1779_2|599306, gene_7601 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599306
Unique Namegene_7601
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_20:348248..353544 +

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Properties
Property NameValue
TranscriptId599392
ProteinId599306
Product nameRNA polymerase III, largest subunit
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:348248..353544 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00340625'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL034ncniL034Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G02000NO19G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599306mRNA_7601-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599306mRNA_7601Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|599306

>mRNA_7601-protein ID=mRNA_7601-protein|Name=jgi.p|Nanoce1779_2|599306|organism=Nannochloropsis oceanica|type=polypeptide|length=1494bp
MKEPVRGEIAPKKISHIQFGLLSANEMERVSEFQVFRSDLFTMPQRTPAP
NSPLDPRLGVSDKTSTCATCKRKLTDCAGHFGHVKLALPVFHIGFFKHTQ
TLLSCVCKTCGRVLLPEAERRSFLRQMRAPQADALRKAAIFKKVVDKCKK
AAFCFECKAVNGKIKKIAGAAMLKLIHERYGGRYGQLEQQALTDAMSTAL
AHNREIASHLEKAQEDMSPLRVHKLFKKITDEDAVVLWLNPKHGRPEDLL
LHNLLVPPVPIRPSVAMEVGGGSNEDDLTTQLVEILQINHSVRMLLSGGG
QQQSIMEQWGFEQAQVSRFINGELPGSQQHYGEKKIRGLCQRLKGKSGRF
RGNLSGKRVDFSGRTVISPDPNLAIDQVGVPLQVAKIMTYPERVSASNRD
RLKRLVVNGPTQHPGANIIRPSGDNAFTKSLNYADERQRRKMADDLKVGD
VVERHMVDNDIVLFNRQPSLHKLSIMAHRVKVMPWRTFRFNECVCAPYNA
DFDGDEMNMHLPQTEEARAEAATLMGVTSNLVTPRNGEPMVAATQDFITG
AYLLTQKDVFLTREAFCRMAAYLGDAAEHIDMPPPSIFRPHQLWTGKQVF
SLLVKSSRFVDCAVNLEMEERNYNKSDAMGYFCPQDGYVCFRNSELISGN
LCKKTMGGQKGGLYYVLLRDHGPGHAARCMNRLAKLCGRLIGGHRGFSIG
IDDVMPSPILLELKRDLLEGGFSKCDEQIRLYEAGQLPLKPGCDSLQSLE
SELNSVLGEIRRKCGEEALKKLPWHNSPRIMTECGSKGSDINISQMMAIL
GQQSVGGKRIQNGFVNRTLPHFRPESLFPAARGFVPNSFFSGLTATEFFF
HTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLQYDNTVRNSEKTVIQ
FVYGDDGLDPAKMEDQSALVTFGRAGDGRSSSSGGGLSKRKKVRTGADRP
VNFPRLLLQTLATHHAPRERPLSPHQLRSLARAAVESPSFQSLLPQGHKF
LEEVEGFAVELADALEALLVSLGFPNQGKNGEDVYEDLLDFDIDAVREKL
AGMTELERINWMAEAKPNGRGFGSGEPGSSNGESTAWRETVQATVSNLAR
MTESQFRLILEEALSRYNRACVEPGEAVGAVGAQSISEPATQMTLKTFHF
AGVASMNVTLGVPRLKEIINASKEISTPIITAGLVQDRSETAARVAKAAI
ERTTIGQVATHIKEVYAPHMVYVEVLLDQEAITKLHLQVDALSVRTAILR
GYHRPSVLKALKERDVLFDPRHPDRLRVLPPELKEGRGGNAVPPQRRIYF
VIQALKAALPDVIVRGINTVNRAIVNKVESDEKRFNLLIEGYGLADVMGT
PGVDGRQAKSNHIIEVERVLGIEAARAVIGTEIEDIMKAYGIKIDTRHRM
LLSDVMTFKGEVLGITRFGVAKMRESVLMLASFEKTTDHLFDAAVHARTD
AIVGVSECIIMGIPIPLGTGLFKLLRAVPKPATGPRKGLLLDA*
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Synonyms
Publications