jgi.p|Nanoce1779_2|672778, gene_7494 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672778
Unique Namegene_7494
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_20:97266..104416 -

Link to JBrowse

Properties
Property NameValue
TranscriptId672864
ProteinId672778
Product nameArmadillo-type fold
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:97266..104416 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005643nuclear pore
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL034ncniL034Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00990NO19G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672778mRNA_7494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672778mRNA_7494Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|672778

>mRNA_7494-protein ID=mRNA_7494-protein|Name=jgi.p|Nanoce1779_2|672778|organism=Nannochloropsis oceanica|type=polypeptide|length=1125bp
MTGLPTPAQMDPATMLLQTQEALRVFYGGQGHSREEFKQAEAWLEAFQHY
PQAWAVADAILSNDSSSAPVLFFAAKTLQTKVYMDWEELEPGMIEPFKQQ
LVKHLATWSARRRQGANGSSSGSSSSSGRMGDLSAFLNRLCVVLAAVAVQ
TNWQGVLTECINLLASHGVPQEHLLHLLEELPMEATSNQFSSSSLSRDAQ
EHFRCQLMQLRPHVFAYLAAVDVGADAGITSPAMLQRKIFRGMGRWITNF
RELPPSDLIENKVILDAFAVVAQGNKNGGDMLFESAVDLLIDVFVAHDCS
RPDAPPLEAHLSLASFLVPNVFALRPTYLAALRRAPPSSSLPSLGDVDTA
KGICMVFVEMGLSYLPLLLSPHPYEQDALLRLLLLATSHPDPSIASYALP
FWYELAREGGREGGGRGVGERYGAVLQELVGVLVEKMVYPEEAGTDGRIE
GGQGAGWDKEEKEEFEDFRFKLGDAIKDVCALVGPVPCLSLLARSLPTSL
PPSPPSSSTSWRHVEACLWALHSDITTAMSVVPQLISLLLSYHSSAPPSS
SSTPLLLRVTTNHVLGRLAPFLLPSSLPPSPPTDLLPNTYSFLLSSLSSP
STSSSAARALHDICLAFGRARGSGSNSSNNNSPSLLPSLPPLPLFEQLMH
ASLHGEIKYRDEVMVLEGLCEGVVAYMQGGREEVVGQMVGIIGKHMAGVL
QEEQREGGGEGVKPRFQSVEEDLERLTAVVKGSEPRGQGGREGGKDGAGE
VAQIVQGLLPVLEASYQAYKSKVEVMEKLCKFLKHAMRAARPRASFYPLL
EPLISFLLRGLSETEQSSFLYCLSYVLSEFGPRRSSSSSNGLQQQQQQQQ
LLARLLLMFEEVSQIVFSSFLRTADDFTDHPDIVEEYFYFASKYFSHCPL
QLAARCQRGEMQMPALPQTLLHTAMVGFVTLQHKDAQRAIVHFLETFLSA
GLDSSSSSSSSSSSLQETHAWILSLLHLPNETQSNLPPFLGPALLFKLFQ
GLAGEIDDTLITDEDDPCLCGVLYAAARCLAPPSLPPSLPPSLLREWVLQ
AVQGGIGEHLASPQERQKVWEGVCRVGEGGREGGRREFFSMVADFAWNCR
ERGRKLRRKGWGRVEGRKDGILEG*
back to top
Synonyms
Publications