jgi.p|Nanoce1779_2|157013, gene_7474 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|157013
Unique Namegene_7474
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_20:50334..55893 -

Link to JBrowse

Properties
Property NameValue
TranscriptId157099
ProteinId157013
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_20supercontigscaffold_20:50334..55893 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0030983mismatched DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL034ncniL034Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO19G00830NO19G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|157013mRNA_7474-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|157013mRNA_7474Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|157013

>mRNA_7474-protein ID=mRNA_7474-protein|Name=jgi.p|Nanoce1779_2|157013|organism=Nannochloropsis oceanica|type=polypeptide|length=1489bp
MSSQTSISRFFRKAATGTPNPSSSSSSSSSSSSTTPLLHSPHHPPKRQKK
PASDLRPSPSPSLSRSSSSVAIAAAAAAAAAAAGGGGDGVNGAGAASAGP
PNKRPRLSHLRTTTSGERKNSYKETDEDENDDDDEEKEVEDDDDEVLIME
QDGAGSKGKSPLSSFSSLSSSPSGSTAKSPQLSSSSSSKAAVPLSIKHKM
MAIIPSTQRHERFVRKLAKATREEEEAEDEEGGEVRKEGGGKGRMQALLA
APETIAPVKGKGKTKSSSAAAAAAATAQRFTPLEQQVLGLKRAHPDTMLL
IECGYRFRFFGEDALLASKILGIYAYIDHAFYVASIPTLRIKIHLKRLLE
AGFKVGVVRQTESAALKAAGLSSSGLKSGTFSREVVGVFTRATYNEDDPA
LAFVGGVQGSGGGGGGERVGGVGGGNQGGLKGFLKRKGSGRDEEEGEGEG
EGEGEGEDGLEDVEGEGGESEEEGVGVAAADGDLATSSFPSSSFIPGPPA
DEHWLMCLAEQPPSFLPPSTSPTLLLLALNTQTGALLYDRFSDSSAQRNE
LDTRLRSLQPLELLLPSPPPPPTSSSSSSPSFSPSPEKGAGKEGGKEGGK
EKGISMSLSLASEKCVAEYVREGGREGGRNVRVERLPAAEFEMKNAQEVV
WRFFSRFEEEKEGEGAKNGGAEREMIDLDADEPKSSALPSSLPSSFPSAC
LSVLGPLLQHMQTFGMSRLLVSRPSLHPFVVPALHMTLDGVTLRDLEIFS
TPYGLPGREKGDGEGGKEEGSLFWFLNQTTTNFGARLLREWVRKPLLRRE
DIEGRLDTVDELAFALPPCLEEEGGLVGKFLRKGRRKGGRAGERAGGKGF
PDLGAMVTALHYHKVTPKRLLLLLQTVEAVLLALPSSRTAETEIHSSLLR
GLFRSLPQTTLLHDVRECLSLLDISATQQEDKPCMFTDPTFYPSLHRHLA
LLHDLEAKMNEELGRAQREMKKPELTFRTLRTGVSSCVEYLIELPRREAG
RVPGEWVLVSQTKEACRYHTPAVISLMRRLLVAREEVRREGEAAWQSFVK
KVDAQCGGGMKEVVQVMATLDALLSLASVASRPGWVRPTLEGKGGRMPLK
IDIKDARHPVLEHLLLSTSSSSSSSPPPSFVPNDISLGVGLNAPETCLVV
TGPNMGGKSTYIRTVALCQLLAQIGSYLPASSASVPILNGIYTRMGSNDD
LARGMSTFMVELWNAGFILKKVQEGEKEEEEEEEGEQDMKKEGGAVGRRR
RSKGEFGMRRRRRRRRQSLVILDELGRGTATYDGMAIAEATLKYLVKRVG
CPVVFVTHYPQLGEVGKERGKEGEEGLWVRGEPKVKAGHMAFVQGEEGEK
GGEGGAGRRMTFLYKLTEGEAGRSYGLNVARMAGMDEALLERAREKSGEL
EARFEVMMNREEEEGRAEKEEKEDEEEEDKDEEGVYGRLGEAVRTLEWLE
ESGVSQKEYARRQREVLASLIELQEEAKKVVMGQDGRS*
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Synonyms
Publications