jgi.p|Nanoce1779_2|557636, gene_7186 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557636
Unique Namegene_7186
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_16:493552..496972 -

Link to JBrowse

Properties
Property NameValue
TranscriptId557722
ProteinId557636
Product nameSRP54-type protein, GTPase domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:493552..496972 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
GO:0005525GTP binding
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL025ncniL025Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G01760NO22G01760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557636mRNA_7186-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557636mRNA_7186Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|557636

>mRNA_7186-protein ID=mRNA_7186-protein|Name=jgi.p|Nanoce1779_2|557636|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MVLQELGDKLTSALHRLQATTVVNDDVLNTLLSEISRALLESDVNIKVVK
ILRNAIKEKVNLAEVPAGLNRRKMVQRAVMEELVRLVDSGTKPYQMKKGK
PNVIMFVGLQGSGKTTTIAKFANYYQRKGWKTCMVCADTFRAGAFDQLKQ
NATKLRVPFYGSYTEADPVRIAEEGVGQFRMEGYEVIIVDTSGRHKQEEA
LFEEMKEIQAVVRPDNVVYVMDATQGQAVYDQAQSFHAASTVGSVIITKL
DGHAKGGGALSAVAATGAPIVFLGMGEHFDDLDVFNPQSFISRLLGMGDM
RGFMEEMANTLKDGGREKQEAMAARLVKGQFTLRDMYEQFQTVMKMGPLS
KVMGMLPGFPSFLMGGGQGGGQDEAATGKLKRFMTMMDSMTDAELDGKVD
LGKSESRVNRVARGSGAHPMEVHFLLKTHAQFSQMFKKMGPMMMKGGDAG
MQKQIARNPGGMMNQLQKAMDPRMLQQMGGAKGMMDMMKAIGGGMDPAQM
KQMEEMMKSMGMGGLGGKGGGGFPFG*
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Synonyms
Publications