jgi.p|Nanoce1779_2|672556, gene_6697 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672556
Unique Name	gene_6697
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_18:465927..470721 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672642
ProteinId	672556
Product name	Sister chromatid cohesion C-terminus-domain containing protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:465927..470721 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL028	ncniL028	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO06G03690	NO06G03690	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672556	mRNA_6697-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672556	mRNA_6697	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|672556

>mRNA_6697-protein ID=mRNA_6697-protein|Name=jgi.p|Nanoce1779_2|672556|organism=Nannochloropsis oceanica|type=polypeptide|length=1393bp
MARGGIGIALEMPDEEDMVAEKEKYGEGGKENKAQVEEEDEEQEGGRVAG
PDRGRGKKGETAMGTAASKRKQGKRGNVRGKEGAAGKRKRRKKEEGDKEE
RKEREEEEDEEGATSGGETSGSDGARKGCRGRPMKGSKRDSQGQVDQEEA
EEEEEKEEEEVVDDAELLARSLTDHDVARQLVMNYLTHRAQKGEPWLRHA
RHCFLARWVSESAEVETSTPSSSSSSSSSSFLALDGNGHLSPSCWHKQVQ
RGKNRRHPSYWTFLASQWEIPPRVALQQEPDLYHVLSTEAVVHLNHALAL
SRPLLQSFHQLLFRLLALLGQGQAAWRARVMKAFGGILESDPLLMLDAQV
KQAVVDRFQDEATSVRQATVELVGKYVLQQPSLLDAYYHPLRERLVDKGV
SVRKTVVKFLGEFLQRCPTHPLRTEICRCLVERASVVKEEDTVKDLIQDS
FQVMWFSVKGWADGKEQEEEEGGEEVMVENGEEGESKGGAGAWRKKKLSD
SERLAAVGLQMVEVIAGLNNTDWLVAVMTGLLFGPGEGEQGKKDRVKQRK
IVAARCGLLVESLVNVLLDLDEGGHPPLNTALPDLATPAKQLLGVITTLH
VFSRADPRFLVPHVDTLLPYLKGENHLDAPEEAALCCKISQMVGLVLPHL
THPDQGTYAQVSRDLVQITYRFGAAAIHAAIQCLANVCTFILGGNPGPVL
GLANTFYRVLGKFRERPTFAVGEADFTTRSSTHRALVVLGCVCRYYPGFQ
PPAGASEGALPLSVLDAPLAEEVNEGNVYVMSYRLLTLYLTKDLETETKA
VQALCCLFTGCMPLMLTAQRDHVVGRMLTIRGGVARRPVRLQALKSLREV
LLAEETRVESGAARSRMAQAGVTLKQRVKGDQDAEASIVGGVIQEHLDAI
KHLLFDRDVHLRTAALGLLAVLHRQGLVNPLQTLPALIALQADPSPGLRT
QAYRQVLVEHEKHPEFLPARIMEGVSLSFTFQRKVLGKGGGRVSAVLPGE
GRREGGGGWSGGGRQCFLGTVYATCVRGNRKHRYSFLRNLLALFEEKTVR
DVHAKMHRQRLSQLQHFSTSSSSSSSATARRTSTGVSMTTADPKGQKGSL
DPLFLAYIAQILAFLPFDVQEEPLFLIHAISRTVSLEGATLVEEIKGLLR
KVERVGGRTGAGEGGGSSEDEDMNEVQTGGGDGAAAGLPPASRSVSLDSL
KDKAGTAMSLCLLLNLKHWLKDVYGFSDERCQDFRSVMGGVGGGAKNERP
LSKPDCLPDLPLPAWLLAEYPREGGEEEVLRVVREQYREFATLIKQDPSD
FLLTQTVRVVGGGGGGGGRRGSGGRGRGGSSGAGTGSRMAGGWGGGGGGG
GKRKGGKGRRGGKGRGGGYEGESDSADEGVAGSDSDDEAGMV*

Synonyms

Publications