jgi.p|Nanoce1779_2|632095, gene_6694 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|632095
Unique Namegene_6694
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_18:451738..461585 -

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Properties
Property NameValue
TranscriptId632181
ProteinId632095
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:451738..461585 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003700DNA-binding transcription factor activity
GO:0003682chromatin binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006333chromatin assembly or disassembly
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL028ncniL028Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03670NO06G03670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632095mRNA_6694-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632095mRNA_6694Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|632095

>mRNA_6694-protein ID=mRNA_6694-protein|Name=jgi.p|Nanoce1779_2|632095|organism=Nannochloropsis oceanica|type=polypeptide|length=2378bp
MIKLRGPAWREVLLEERREDPKEVPEWFDPDLVEAHRVIACETAYVMMTV
IVRQIRRMRHTLLLDEQAADAGEQGGAPQALPVPLPPPTPAEEAEDRQHD
EVRYLVKWRGLPYAEVSWERWADIKEWAYEEVALFWLLQRPDLKLSPAMA
STMRVLHDVDNPTFGHRSYTFLSVYDPDGPSDIEIPPPAVAAPAHIPPPP
TLEEGGTEEQQQQYQKDMHAQAVAHAAASSNVLQLRDYQLTGLKWLIFNY
YQRRPSILADEMGLGKTIQTMAFLTQLYRTQEGQNRGPFIIVAPLSLINQ
WQGEASTWAPDLNVLVYHGNADSRQVLREYEFYFDEPYIRPEDAYYLKQN
NIVKFDILLTTYETVIKDIKILSRVAWKVLVVDEAHRLKNPASRLFMELK
TLPRDHCVLLTGTPLQNKTEELWALLNFADPIYFGDQSGFNKEYGDLKDA
SQVESLHNMLKPFLLRRIKEDVEKSLPPKEETIVEVSLTPLQRKFYMAIY
DRNTTFLFKETKASMAPSLMNVMMELRKCCNHAYLNRGVEERILSEIPEA
QRTPENLHHQLVSCSGKMVLLDKLLPRLKKEGHKVLIFSQMVRVLDLVED
YMRFVGHSYERLDGTKKATERSAAVVRFNNPALNRFVMLLSTRAGGLGLN
LTAADTVIIYDSDWNPHNDLQAQARAHRIGQTKAVKVYRLLTRKSYEVEM
FHAASMKLGLDRAVLAHQRAEGEMEAGAASAAAGVGISKSESSLLKPTKA
QLGLSHTEVEHLLKRGAYDVFRGDDKEGQEFQEADIDQILQRQSHKVVYG
NQESLTKNLASSFSKASFVSTDNKEDIDLDDPEFWKKAIGLTEPEKEAST
KLLGGLATTAILGEGEKRKRKRNERFDAKAMAGLDDVLGGYDSAYEGDSL
DDSGGEDGSHSGSSDAHPKRRGRPRKGEAGKHPRVRSRAGSKGGQGTPVG
NGRFTVGPDGQVIPGGGGGMSSTGNPQVRRVPKWGPHSRDRLIRALLEFG
FGRWERIRIESLASEVPLGEVESFCRSYVLQCGLCAGEGKRPRHESKFVK
DAIAAATKLAAQMKSGEIVIPEVLQDERFLLRLRQGLARKALVRLDLLLR
LQSPVINEAVRLAFVALTPEQLIAKGLPPILNQVPDHLVSILPNFEERFS
KLSKAEVAKHIVLGDVRPTWTQATPWWDLECDRHLLVGVYAHGFQNYNAI
RDDPDLCFQKKMEAWLVRNPKGFMVEKKPAPLPFNGKEQQMLPIYTWSPL
QVFLKLPCVGVEIKEEGKVDKKGEEKGGGGEVEGGIEEEKQQSHYIRAVT
LPGKRVSKYRGVYAQPGSAHWAVQIQQMQGTQCVGSYASEEKAALAYDTA
ARKLYGPEAETNFTRAVSAIGVAAAADTAAVAAAATGADAGAGDAGAFSP
SPSALAVGSGTCSEAELSPSARLDVAAEGEGGRESGGAKASSAMVASGSN
NSISSLAIVKSSGSEPPRRRPEVTKAPNHELPLVWHRSSLYRGVRAAGPK
WTAQISYNGQNHHLGTFNSELEAALAYDALSRRYHQGQTAVLNFPEGPEQ
ELDRIDALMQELTESGLPGGWSEGGAEEAAAMAATKIAREEARVSVKKEK
EVVVIDDDEVGEEKKKEARELEVKEEEKKVKAEEGVPDRVVLKVDVEEAA
LLQEQHEQVSAPTPNPDAIDDDKHAATPAAATAFTEEVAGEGTKAEAVTP
QTAPRDEVKKGSEVKEAAASAESTAAAEAAGTGAEQPNISSADTASATAE
MTVWKEGGGEEEQRKENVEAASFKATAAAAAAAATAAAEKGGAMVGTSGT
AMQVGEEGEMSRNVSLAEKGEKKEGEGSDENAGEIVKKDGDGKMVTTDEP
LIKKHWPDNYKMLNKLVTWLIDDPDARETQADVKKRLEEEGLRVTEGKVV
RQIKRRPSEEDERGMSTSGRGSGGEKGSPSSFDPENKKIKTSISGVSARG
VGVWSTDDCRRLCNALLVSGAPLSNPALPVTLYLATAGRLSHSALVDRRT
PSADGSVDQVIGYLPTFTWNDVRLRAGLPAKTPEDLQAFYVTELLPLFQR
LCTHREPLPESGDGLSALPDPSKSVLEHTAGSRSIAYTFMRRQQLVRAIR
FILEKEPKMLVEYLGSTEGKNATGNLPGWWMGTRLDVSLMLGACWKGLLC
IDQIRKETMLGLCDAAIEGHLRKTVIEKVAASEMTMPSDAEFNEYAQRAM
AAFPDRKVLEERLHRNCIIIARHVPATAELRFGGARGNKSPGTPGQGSRG
STPVPAVDVEKGGANSEGQGGRGGVTPGAQAAAVVATAAAAADAEISPAA
AVSTNPALLVEPKSSLVQVPTSSSPEPPVPVVQGQQEHQGQQEGESVSPI
AWEQGQMTADDGSQPPQQEGDGGGRME*
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Synonyms
Publications