jgi.p|Nanoce1779_2|597514, gene_6623 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597514
Unique Namegene_6623
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_18:301445..304542 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597600
ProteinId597514
Product nameAAA ATPase domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:301445..304542 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0008186RNA-dependent ATPase activity
GO:0015462ATPase-coupled protein transmembrane transporter activity
GO:0016887ATPase activity
GO:0017116single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0042623ATPase activity, coupled
GO:0042625ATPase coupled ion transmembrane transporter activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL028ncniL028Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02920NO06G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597514mRNA_6623-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597514mRNA_6623Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|597514

>mRNA_6623-protein ID=mRNA_6623-protein|Name=jgi.p|Nanoce1779_2|597514|organism=Nannochloropsis oceanica|type=polypeptide|length=961bp
MVPRHRSKPPRLPPLFLLLLVFKIFLATVTASATHQLSGIFQNVDFTKGS
LDVLERAISTAKSKANAQVSPLHLAVCLFDEDAEHKGGLGGQLVAKANVP
LAQLRRSLASAIAKDHPTQSPAPSQLSISKDLQTLVQTAERMRSDAGDSY
VGVHHLLQALVQDAKAGKILKEQGLALNKVKGIVASLRKGRKTESRQEGE
SNFENLNKYGRDLVADAEKGKLDPVIGRDGEIRRVVEVLSRRTKNNPILL
GEPGVGKTAIVEGLALRILNGDVPKALEDNKVISLDMGSLIAGAKYQGEF
EERLKAVLEEVAQGDGKVVLFIDEIHTVVGAGATSGAMDASNLLKPMLAR
GELRCIGATTLGEYKKYIEKDAAFERRFQPVFVTEPSVEDTISILRGLRD
RYESHHGVRILDAALVEAARLSNRYVSGRKLPDKAIDLMDEACANVRVDL
DSRPQALDQVERKCLQLEIEAAALAKEESTDPASATRLGEVRRELEQLKE
TRTALEGEYLKAQGLLEELANLRREVEDVEWAVDENKRKFQVEKAAELQY
TELPKLQERYAEKLDELKKSSNLLQDFVGPEQIASVVSRWTGIPVSKLNQ
GERDRVLGLEDRLKSHVIGQDAAIKAVASAILRSRAGLSASSRPIGSFLF
LGPTGVGKTHVAKQLAKELFDDEKAMLRVDMSEYMEQHTVARLIGSPPGY
IGHDEGGQLTEAVRRRPYSVILFDEVEKAHKSVLNVLLQMLDDGRLTDGK
GRTVDFSNTVIIMTSNVGADVIMRDVRAHQKLSSKGMKMLQDRLRSHFLP
EFLNRLDETVVFQPLSHSTLKQILVHQLTEATMMLQAADTNITVSLDESA
NEYLLRKGYDVVNGARPLRRLIERIVVTELSRLIVAGHLCSNSKVNVEME
HVLGEGDCFKYIIQRWEGGVGTKKEGEPGVFWQMLGDYMLPQDDGEEGPG
VEGGRYDDEL*
back to top
Synonyms
Publications