jgi.p|Nanoce1779_2|624556, gene_661 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|624556
Unique Namegene_661
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:126781..130160 -

Link to JBrowse

Properties
Property NameValue
TranscriptId624642
ProteinId624556
Product namecoatomer protein complex beta sub-unit vesicle coat complex COPI beta subunit
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:126781..130160 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005198structural molecule activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0030126COPI vesicle coat
GO:0030117membrane coat
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G00840NO02G00840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624556mRNA_661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|624556mRNA_661Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|624556

>mRNA_661-protein ID=mRNA_661-protein|Name=jgi.p|Nanoce1779_2|624556|organism=Nannochloropsis oceanica|type=polypeptide|length=980bp
MAPSGPNAISSIETSCTVLFHTEKASAVQQEEIMRDLEHPDVKFKIRALK
QTIMLLLSGENLPRVLMSVIRFCSSTDDHLLKKLLMMYWEVVPKFDGTTK
KLLSEMILVCNALRNDLNHPNEFVRGSMLRFLCKLREPELLEPLVPSIKA
CLEHRHSYVRKNAALAVLNIHHNVSADLVPDAPELMHRFIQSETDSGARR
NAFLFLCSEAEILAIQFLTEHLEDVPRYGDGFALLVLELTRKVCRKDPAQ
KARFVRALFNLLQSNSAAVSYEAAWTLVSLSSAPTAVRAAASTYAQLLNS
QSDQNVKLIILERLSDLKQRHTRVVQEVLMDILRALGSPNVDICRKTLEV
AMDLVSPRNIEEVVGVLKREVLRTQEGDQDKAAVYRGLLIQAIHTCAARF
PEVADAVVHVLMDFLSGDGALDVIVFVRSIIEQYPIFRSSILGRLLGSFG
SIHGNTVLGVAVWILGEYALEPALRTKAFDCILANAGQPPYVSKRVLGRD
EGEGEGVGGQVPAQQLVTKSVVLSDGTYATQMAMVPREGGVVGMGGEEKN
LTPLRRALLAGDVFLGGLLVSSLTKLTVRALETGGPLDDACKEMQAKTLL
VACGVGGMAEVKAKGNVGAYADVLERVTVCARVLLDPESLLLVKETFLSK
CKESYAAFLRFKQEEAAKTEKAKQMGKEGGKGGLSALPDALINFRQLRHF
GVQTGDFDLYDGEDIQRATGAGNAKGEDGGEWGKKLSHVYQLSGLADPVY
AEAYVTVHDYDIVLEILVINRTNTTLTNLTVELATMGDLKLIERPQSYTI
GPQKERVIRANIKVSSTETGHIFGTIVYENSSTAEKGFVNLNDIQMDIMD
YIRPASCSDESFRAMWAEFEWENKVAINTTITDLQAFLTHVVSSTNMQCL
TPTSSLSGESAFLAANLYAKSVFGEDALVNLSVEKKDDADGRLSGYVRIR
SKTQGIALSLGDRITAVQRVAGAGGGGSD*
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Synonyms
Publications