jgi.p|Nanoce1779_2|597370, gene_6569 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597370
Unique Namegene_6569
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_18:168191..172131 -

Link to JBrowse

Properties
Property NameValue
TranscriptId597456
ProteinId597370
Product nameABC1 family-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:168191..172131 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL028ncniL028Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G02510NO06G02510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597370mRNA_6569-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597370mRNA_6569Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|597370

>mRNA_6569-protein ID=mRNA_6569-protein|Name=jgi.p|Nanoce1779_2|597370|organism=Nannochloropsis oceanica|type=polypeptide|length=958bp
MIVRRLLGQSQFRAVILHKASFLFLMLLLLFSLAGWGEAYTLLPLPASSK
AAARSWGKLRTRLLGSGSKPGSTVLRRDAGGPNTPVKERMILRSASAPSP
PTAQVVPPEAEEGGVEMFMDEIGKIDGAMMESLGDIESKATAIDTGLRDR
FEEIEKGFKGTLSKAATPATTTTTAPITTTSFVTLPVPELKPEPLQQEDR
ESVEAAARAAAAVPGAAAASAAAAPDVLLAASSSSSSSPTVPSIVPSTSN
SLVSTSGKSKESKTKIQANMMTTAPPPSDDWSDSSSSSSSSAIDYGAMRT
GKIVQLWSNGDFSTFEFSKAMMSRWGTKVQSAVSGNKDRAAAAEAALRAT
STAEAATYMEGGWARRGQGSAFFRTLEIWKIAVQFLLKELKVRKIKDMEE
QKVERRKAAVFAREVLLKLGPTFIKFGQLLSTRIDILPKEYTEELSYLQD
NVPGFSGRVAKLIIENEFGQSVEEMFDSFDEEPLAAASLGQVHRARYKGE
ELAIKIQRQGLKELFDLDLKNLKVLAILLDKFDPKSDGAARDWKSIYEES
AKLLYKEIDYENEGRNAERFATDFKDIPWVKVPKIYWDFTSKVVLAMEYC
PGIKVSDIEKIEIAGIDRELLAKRSAESYLYQLCRHGFFHCDPHPGNVAC
DSFMGGRLIYYDFGMMDEFRPEVKRGLVDLIFSVYEGDAKATCDAMESVG
ILRRGADRVSVEKIARFFLAEFRSTLKSKGKWLNELDKEEQKRQKASRRA
QLGADLLSLSTDLPFKFPPTFTFVFRAFTSLDGIGKGLDSKYDLTRLAQP
FLKELVELRDGSATISLLKGWQKKLGWRPQDLAAVVQSPRKVSQIEDTLR
RAEQGDLKLRVRVLESERAFKRIDIVQSTMVNAVMASMFLNAGIMLSATS
TAAAAAAGAGSPSLASRVFVKGLLAAATMFGFKIPINYMKLRKFDRASVE
LGLVQKA*
back to top
Synonyms
Publications