jgi.p|Nanoce1779_2|595017, gene_6435 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595017
Unique Namegene_6435
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:627899..635269 -

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Properties
Property NameValue
TranscriptId595103
ProteinId595017
Product nameAAA ATPase domain-containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:627899..635269 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008094DNA-dependent ATPase activity
GO:0008186RNA-dependent ATPase activity
GO:0015462ATPase-coupled protein transmembrane transporter activity
GO:0016887ATPase activity
GO:0017116single-stranded DNA-dependent ATP-dependent DNA helicase activity
GO:0042623ATPase activity, coupled
GO:0042625ATPase coupled ion transmembrane transporter activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G02120NO20G02120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595017mRNA_6435-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595017mRNA_6435Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|595017

>mRNA_6435-protein ID=mRNA_6435-protein|Name=jgi.p|Nanoce1779_2|595017|organism=Nannochloropsis oceanica|type=polypeptide|length=881bp
MSMSITPTEKTQEVLSQAKDLAIEMSNTQVTPLHVMSALVAEDDSIGTGI
VRAAGLENLDSLRQSIAQALNRCPRQTPAPSSIHFDSAMESILVQSAQQA
KKKGDAFLAADQILAVLIDHASVASACRQAGLMADKVKQAIEKLRAGKKV
DSAKAEQNYEALKKYGHDLVGDAEESKLDPVVGRDEEIRRVIQVLSRRTK
NNPVLIGEPGVGKTAIVEGLAQRIVAGDVPESLKSRRVIALDMGALIAGA
SYRGEFEDRLKSVLKEVKDAHGNIVLFIDEIHLVLGAGRGDGAMDAANLL
KPMLARGELRCIGATTLKEYRQHVEKDPAFERRFQPVLVGEPSVPATISI
LRGLKERYESHHGIRITDAALVLAAKLADRYIQNRFLPDKAIDLVDEACS
MIRVQLDSRPERIDQLERALLQLEVEATALRREEDVQSKARLTEVEKEMA
TIKDELQPLQLRYEAEKGQVNEQQRLQNKVLELQRKISVALRDRDMAQVA
DLRYIALPEVEKRLVEVSAEIEAKRGDAAESGMVREVVDEQSIAEIVSRW
TGIPVNKLTASERQKLLSLADVLHERVVGQEEAVEAVAQAVLRSRAGLSR
PEQPTGSFLFLGPTGVGKSELAKALAQELFDDEKHMVRIDMSEYGEQHSV
ARLIGAPPGYIGHDEGGQLTEAVRRKPYSVVLFDEVEKAHVSVFNVLLQV
LDDGRLTDSQGRIVNFKNTIIILTSNLGAEHLQKAALDSSTSNLSDDEDS
ASNGNGNGRSNKKSKKEGGSTVISEDVRGKVMAVVRRHFRPEFLNRLDDI
VIFSPLSRKQLRSIMQLQMAAISNRLKDRNIEIHLAEDGLDHVLAKAYVP
EVCSDITSSFCSDLKNPCVPHIYLTYSVFS*
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Synonyms
Publications