jgi.p|Nanoce1779_2|671947, gene_6359 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671947
Unique Namegene_6359
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:438449..445052 +

Link to JBrowse

Properties
Property NameValue
TranscriptId672033
ProteinId671947
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:438449..445052 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01440NO20G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671947mRNA_6359-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671947mRNA_6359Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|671947

>mRNA_6359-protein ID=mRNA_6359-protein|Name=jgi.p|Nanoce1779_2|671947|organism=Nannochloropsis oceanica|type=polypeptide|length=1675bp
MLWSRNRCKGLGSAIVLLLLQILVGPEILTTRAHSHSQGHSHKPGGRERG
GPIARVHLTLLPSPKAAPGQGMGVRRLLHEVEDEKDAELEAPFGRRLALN
FEAFGREHHAELWLNDALFEEGAVSRYTTEKGEEVVERPRAVVYTGTFLD
GGWIRATVHEHDVISAMWLDKTHGQVSMLVPAHQYETTLPAVAARAAEQG
GRMLAFHLHEMEHSEHDRELLSEWLGYHLLDPSPREGLPEIPPPLTSGSN
INSFTFPIRNGTDAHSFDSSSATMDIPEEGNGKERELQTLPSIFMNTLAK
SLSPYGLMEGCPSTTYRAAMGIAADAGYTRRLTGLGTTTKDTAAAVRRVN
NDIQTQLNIVNFLYVDMSNIFISVAETFVKTTPGGESWNQEPLDATQLNG
GNRNEWGCPVSRASSDSSDYQSTITNFGRWRAGLVSTRRYAFWHLLTNCY
PPPGTVGLGYIGATCATNFMGSSWTSLQNEATFMTVAHEIGHNFGAYHTL
QTGGIMSYDPVINKEFTFAGSNPREICNHINSVKGVCYGVMTPRCGNGIV
EPGEDCDDITGCCDPSTCKLVASAKCTPGLDSTCCTASCQFVPTSTGCNV
PGGPETGYCNNGFCRFNRLAAAYSNLQGCNAPETDPCKEYVRFNRGECRY
TGASFGMSGFDMPDGAFCSRALDKTTHSCADPITYTQALAHSNALPDQIP
YSSSHTFPHQKTHSCADPISYTRPTREPALAAVVRRAQGRDERWETPRED
EKEDEFQRYLQKEEKVEEQEKNEETRRYMVEKEEEEEEEEEEEEEEEQEE
EEEGMKEVGGGPDVMVNNPQVGETLYNGAVALVRWTANVEVNKVDIILSD
GTVVLDGGRVEGKKNGTYHWKVKAAPGVRYTVSVYAYPADGSEVMIDVSS
VFAIQDQTTVAITAPVRDAIVTMGEATNITWTTRTTGALTNVIISIINPR
TSAELVNFGPQPNSGIYRWVPSSTLTAGRYFIFLAYSPSSQANATVRGPS
FRLRKQTVEGAMTFISPTMDDLLESGKPYTVMWTSPASITKTALYLIQPE
TGLNVQLYGGVDENSFVWMVSALPGNNQIAPGSGFQLQLVDASANKTKVA
NATSDLFSIYAPQPFVEITSMFEGQDGAMWVRGRNATITFKASDASDTLT
LEIQDENGATVFVVTTKAEVSAGSFTFALPFMAPPSDCFSCFLVAVSNRY
PSIYHTFPTSFSIGSHEHSDLAAAQTPASLTLLAPTDGTTLQRGSQTNII
WTGVMISDVTILLKNHTSGKMLPLVFIENTGIFEWEVPLDPAAVGEYDIS
LVGPQTGLFTPPVRVVIVDPASAIPSLALAAEPALPSVWSEGDLITVIYT
SEGLVSPVTVQIYSSELGLLATLTNDASTSGSYQFIAPAPPGDPVTDAYL
LLSTPVGAQAQSPPFTFYQAQAISDVTLPATTLYKGQAYRISWHASGISF
PVAVLLYSGTPDRRTVSDQPCVPWEDVSGNEYHGCVLSYDLSSEMCATEV
DEDGLWVAGGQCQPLSATFKLILAVADPTNPLSSTDGYTTFHIPSSSTEL
PSPGAVYTIVVAAATSGHKHKARSIDFTIGSPEPVTQSSTRVADVEPLSH
QHGRQDKVVKDMALDEDERKDKERLWNEIMPSVRVVGGSVTVFCMLVAAF
LGVYVVRRRRLQALRALRVQQSES*
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Synonyms
Publications