jgi.p|Nanoce1779_2|90580, gene_6353 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|90580
Unique Namegene_6353
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:407985..413222 -

Link to JBrowse

Properties
Property NameValue
TranscriptId90666
ProteinId90580
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:407985..413222 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01370NO20G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90580mRNA_6353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90580mRNA_6353Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|90580

>mRNA_6353-protein ID=mRNA_6353-protein|Name=jgi.p|Nanoce1779_2|90580|organism=Nannochloropsis oceanica|type=polypeptide|length=1531bp
MADLDILSSMQERLNALAADKASIQKELAKLEERLQDAYQVQGQRPRETD
AELEKAMRDLEYKRTTQSMSLMDEKKLLRQIGLYKKEKLRVKEYNLVEEG
LKSLKAHKNHLYDERKAKEGAMTELSKALRKMQLAQRVGVTAEELIEESL
EVPEGFMARLVGKGGMNLKRIEEACAVSIDFDHGRGGSGRISGSAAAVAA
ARMQIEEVTAAVSEEIKVSPSLCATLLTGRAVRTQALMKEHKVRLEIVRE
KNLVKAQGIPSRLASLKAALALLETQTIRREVPVDVKLIGPVVGKGGMHL
RQLEEEFPGVGIEVHREEGNFVVVGLAGEVEEVASALERLACSLEDKEER
VEVGKFLGHILMDDSGRLLKEMRKAVGCNLYLDLKKEEDSGWLAVRAPIA
ALSEAVEETRRRVGELDGKVLSMQVDPSMIRFIIGKKGAVISALRAQTQA
LIEAEDKSGILRIYHPEEEGREATKAAVLDVVSKNQAVEVEVPREAAMAL
KGGKGMELRNKCAAPGVEVQLDIDAERGLIGLRGAEGEMKKVREWLRDFA
EDNYGIEMDLPPEDFLTLVSEGGTEGGSLKKQVQDATGVQLFTIKEENLL
KIRGPRAACARAEAMLRQALEEGEAEGTTVHVPLHPDAYPGLVGRAGAGI
NKFREEHGVALIVLRMRNQIRVRGTSREQVAKAAVALRSLLGGLRSLVVV
KASESAKEGVEDRRGELGPFKAQYDVQVDSVPEGYRMRGLVAEVAAAKQR
LVELLTQRAKVVVALTAPQCAILAASGEGNWRKVRENYAVACELDQEKHQ
VVLQGVTPAVGRAQSHVCSMLEILLGGEFGHCPVPVPALAALASPVAVEK
MKSVTGVDEVWVDREGSLVRFRGRMEAVRAVPAAVKEWLKTWEESYARVP
FEGWMLPHLMGKGGEKVKELQERTGAAVEIDREGCVVRLAPGTGIVEKKK
IKRKDKGKKEGKEDAGKTKGRKKADELVAAALGGDGAGRGEEGEEDEARA
EAMAAVDETLFEEELQGEVGGEEDDDEDEEEEGEDKKEGAFGAEPVDEGA
RDIASVQAAKAWLLQEIENIKKKHAQVVITVPQDVLPFLIGKKGANIAKI
REESKATLDILNNEGGREGGRDHRDHREGRGGRMYLSHSFPSSSGPSATL
PTAPAGMVYVRLQGGEEALAKAQELVQAFVSEWQVQNVQKEISVLGEQIR
LIVGGKGATIRGIAEESGAKIDVNRERLVVVVRGNAEAVDKAVGLVQAII
DEDNTTNAERRAEQQQQQQQQQQQQQGAEKLLNGSASSAATMATHPSTTT
SASGGSSSSAAVTSAADAATFPTINKNGEWNFPTVPPGADAAYSKVLLKK
QAAAAAAAAEKRKRKRQNKKLRDNAAKEEGERGKVGMETVSATPVAVPAV
VVAKETKTVTLKAGGRGEAKKEALKKEDEAREEVTLHETTTATTTTTRSS
SSNEACAALAKVAEVVKTQKAGALLDLIMGGAVPTNPPAPAAAAAAVPPA
PAGVGKQQQEVGNGRAPAAVFKSSASMLRL*
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Synonyms
Publications