jgi.p|Nanoce1779_2|671899, gene_6303 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671899
Unique Name	gene_6303
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_15:289677..294711 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671985
ProteinId	671899
Product name	Armadillo-type fold
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:289677..294711 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL020	ncniL020	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO20G00880	NO20G00880	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671899	mRNA_6303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671899	mRNA_6303	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|671899

>mRNA_6303-protein ID=mRNA_6303-protein|Name=jgi.p|Nanoce1779_2|671899|organism=Nannochloropsis oceanica|type=polypeptide|length=1458bp
MDPVSEALRTAHAPTAHEPLRAQALQFLDDFKESENSGEWAFHTLRTPSA
PAEARHFALQCLASLLHSRWKGWDGPVRRQFRVAVMELVTATGAGINGEV
FLRERIGLLVSGVGEKEYPPQWPEMLNDLATIWDIGGGGRGVGGGREGGA
TPIIIALLALRNMAEDCVDSDFNNVLSTTRRTEILRSLNTELPQVLPRLY
ALMARTYEGRGREEGGGGGGGGRGGGVDILKAALQTLKRFVVWIPPELLL
GAAEGQGGREGGGTMSFVDVFGFLMAEESTRQDAVECLRDLGGRKYEYCE
HIKVYLEKMSGAVMALIPQGEAWRSLTFGETVCQVLAGFLMANLEKWLGE
EKEVLRAGTREYELLVRCLQLMAELLKLPSYRAAVALLPGWAAVLKQEKL
RGLGLLEPLLPMVMTAYCDKSVKLSFDEESGSFPENPVADEEFIDLEEYL
ALLSTLKANAMTLMRTAAELYPTQAIDFLKERLPCLIRRFGTPESAAACT
TAAATAAGAASKSAAAPASGPGTAIGAGIGVAAVAGGWVTVQSEAYRQFE
GLVNPLDRILGGIPEPQQGNEVDVALVQNVGWLLTVLLEWRVTDPLLLYC
HCLLLEGFKRFYRYFDRQLWTVLERLFTYMEYRDPALAGQVFPNASQLMK
HLSPEAVQVRRRGSNSLTEICNTVPDIVVPFLGELCTRCRALMVKGEVSD
SQRPMLIEMLVVVANAIADPVQRMTFVGELVADSEGYWESAATCQALASV
PAFLQLFGVGVGEGGREGGAQGGLHMPQTAEEWDEAHDRTHALLGALNTF
LGVTRRLKVPQQDDISSKDPTLAGIARVLICDSLSLEELVHINPFVPVWV
RILPNLLALLRVLHGMWTPDVRRELLSHPHARHLLSLNDDEVLSRVKAGG
ARPPQATVGVGGNQYRKWPTWLNQIRQSAYQLLEKACHHKVIYYHPATLL
AMRETVLGPLVWMDHRHVPWLIKNFLEPYIVNCPRPLFASHLPPIVGPFL
SHMVVRCSVTWGGGGREGGPGGELEHLVEGGTVVLTEGLREGGREGGLSV
EDYETIVDKLRREVTRAFIEALQAALALRGGMIQALVESNKAVHHQQQTA
KAAHVLTIGGGGGGRDGGRDVQSQQLYHSSSAGGGGEEGGGGKGGEGEGG
GEAGVNGKCPPPPCTAVKEFVDALIRFLVVDSDACAVPLFLSVIGALCWQ
DQHSCRRAVHVAQRMLEIGGKEPKLYSAFGLELFKELVGAVLAEQAWVLG
MQNDLVALATEIYRGMVIGENGTLGGGGGGEGGREGGSAGGGGGPRVSPR
RTALVACELPRQVLLGLPGLTPAIVGEMEERMLRTHQSKEQREFLKETLK
IVVETRGGGKKEGRGGGKEGGGRKKCESTPVGKEESILRGGATGREVGRG
GGGGGGGEGGAGGGRGRSGSMEMSELQAKLIRRGQALQAQREEVELCAAS
VANLFGE*

Synonyms

Publications