jgi.p|Nanoce1779_2|671882, gene_6280 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|671882
Unique Namegene_6280
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:216676..224537 -

Link to JBrowse

Properties
Property NameValue
TranscriptId671968
ProteinId671882
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:216676..224537 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0051287NAD binding
GO:0008137NADH dehydrogenase (ubiquinone) activity
GO:0010181FMN binding
GO:00515394 iron, 4 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006120mitochondrial electron transport, NADH to ubiquinone
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00650NO20G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671882mRNA_6280-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671882mRNA_6280Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|671882

>mRNA_6280-protein ID=mRNA_6280-protein|Name=jgi.p|Nanoce1779_2|671882|organism=Nannochloropsis oceanica|type=polypeptide|length=878bp
MSTTDEAKANPPADAAAAAAAAAAAAGDGAAGAYEDVEVLHKLADTLRRT
MKIRNGVLQETRVDYFKGTKLIKFLTTDLLSKADPKLPPVASEAQAIAIG
NLLLKTKGEDGQPKYFIQCNKVKPRTLELTPKQNYEELGYYTWIYEGSQT
LSNFMTFLIIAGFLAITCFPIWPHFLKVWLWYVSVTLLSFMLGFLLLRFL
AFLFVWVTGYEFWFLPNLFDESLSFVDSFKPLYSWEKSPPGQGLYRAGVV
VAFVAFLYWAYSQPTEFDSLLTAQKQFMHDLYEGNLLSDVAQSDKDDIDK
PRAYPSYEELLRESELDLAGADALSDEERGDSVIDSLLGEDEAEDAADDV
QDAAAKEGEGAKKEDFRVLVCTGSTICTMLVSSSSKAKPALGRLAGAILR
RGAASAAPPPPPAAPALTKVYGGLKDQDRIFTNLYGEYDWRIDGAIQRGD
WHMTKEIMWQGPDWIVDEMKKSGLRGRGGAGFPSGLKWSFMPKKSDGRPS
FLVVNADESEPGTCKDREIMRKDPQKLIEGCLIAGYAMRARAAYIYIRGE
YFNEALVLAEAIHEAYRAGKLGKNAAGSGYDFDIYLHRGAGAYICGEETA
LIESLEGKQGKPRLKPPFPANVGVFGCPTTVTNVETIAVAPTILRRGASW
FASFGRKNNSGTKLFGISGHVNNPIVVEEEMSIPLKDLLERHCGGVRGGW
SNLQAVIPGGSSVPVLNQTDCEDVLMDFDDLKARGSGLGTAAVTVMDKSV
DMIAAIRRLAHFYKHESCGQCTPCREGTSWLETILERMEVGKADKREIPM
LEEITRQIEGHTICALGDAAAWPVQGLIRRFKHVVDERIERPEAYDPAKS
FQKSWSGDKFTNKNWVDQFGDGKAYVK*
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Synonyms
Publications