jgi.p|Nanoce1779_2|82599, gene_6139 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|82599
Unique Namegene_6139
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:604256..611774 +

Link to JBrowse

Properties
Property NameValue
TranscriptId82685
ProteinId82599
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:604256..611774 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G02440NO16G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82599mRNA_6139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|82599mRNA_6139Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|82599

>mRNA_6139-protein ID=mRNA_6139-protein|Name=jgi.p|Nanoce1779_2|82599|organism=Nannochloropsis oceanica|type=polypeptide|length=2282bp
MAPESFPRGKAPQPASTSTAYKKQSVNPSSRKPPPTYGGGPAAKRKREAK
TAGSSSSGTRSSNSTTTPSSTSEVSTTESTKADEGPDFLFGLPKKKLKQS
ASSGGGGSLATGGKGDGLVDEASKIARAVGLGCVTKVGRAPPQIQPLSLK
RFSRGTAVLGIVTRVGPKDIGVALPGGISGRVSFPEVSDPMFAHFSTPAA
ETFTDSLQHQETTLRMAMAALRPGQMVRAVVLSMPAAADKHKGASFSGGK
ASQKLSLTLRASVVNRGLKLEHLLPGGSLSGAVASVEDHGYVIATGLEGI
TAFLARRHVKGGAGAEAQLIKGSPVDVVVLAVKEEARSITCGFDPTVTPK
ALTRGSALTLQGLKPGMLVNAAVDMLLKNGLVLTFLGGFSGVVILEHLDR
PYVDNDWRKRFRLGDVLQARVMLVNAQSKTVYLTLRTHLLGLRPASGLPE
VSQLLAQTKVLRVEPKKGLLLGYIPAAEGGSGKDLDTCDDEARIGAELAS
WRKQRARAKDDGEDDGIKKKGEDPEEMKLQKILEGPRYVPVFVQASQVDA
LASVRVGQTVACRVIGTAPMEGAVYGSMKAATLEAPFVCLADVTPGQLVH
AKVMAVAGWGLTLDLGQGIRAHCTNMHLADGAGPKTTSLRAKALAEAKKG
KGGRGVYQAGQQVSCRILQVDLATRKVYATLKPSLLKDSPETVIAAYSKA
APGRTCLGFVTKVGDFGVIVTFYGNVHGLLPAKHLAAQGVESPVEAFRLG
QVLRCVVASCEPHREPPRLSLRLDVPDEARGEDEAGKQAPAEQLRPGQRV
SGTVERIQDPYAMVRLDRCGSKEPLAFLHKYQLGDHAALADQLFARLAKG
SRVEDALVLELRRDREGPLLSLKPLLRNASGGGILDHGTEKTATPAADEP
VKLQDLKVGGARLCGYISRVESFGLFIRFVGGQIALAPRGLIADRFVEDA
SGLFREGDSVRSLLHRVDPDMGKVYVTTQRSQLPVTDTAFLETLLCESVA
AACGNSSSRDSNGSIEATDESDTLDWRRYAVGSTVNAIVTAIKDYGVVLS
GEDHRTVMLAPGPEHVLACAPHDEVKVRILDVDWAKRVLVVTLLPELVKR
GRAKHRKSAAGIYLPVGARGEAEVVLKRDRYAVVELEGALAYLAVADYQC
PYLATGNLEVGIKVDVVVRRPWRLALETKPSLVYPQEPVMLVTLAQEQDV
AERDKAPKAGASKKLQKEFKKLQQQKEKEKKAEAAVQQRISIKESKAAAA
ADKAEKKSGTAEHVARKRPRATAASEVVVGATLPAIVVEVRPDELVLALN
IQHDEDEEKQRMDKKRKGKKSASARVLAKVFVTHSGRQHLIDLEEAAKEA
LEARQIIKEKGEREGASLPSFHPLAPYKLGQELDVRVVEVREKELSKVKL
LECSLRPKDMQASAVDSVALQPAWETLAVGTILLGVVTDVQAEGLWVAVS
RAIKGFVHYLDIARDGETGLFARITAAGAVGVPVPVVVTHVDPTRHRLQL
SIRGVPLTDDLEPANFPLLPSAESKLVKRHKGEAIVGASFLPNVGDLLTG
RVCLGPHAPILNPPSVAIQLGHRVFGRLCITEINEPEHWVDQPLSRHACA
LEEGQDVRCRVLVVEEGRIDVSLRPSRLQPHVATKAIIAEDDLPEEGAVV
KGYVVGTSTKGCFVRVARGVTARVQIKDLADGFVKSPIEAFPVGKLVAGR
VLKVEEEGGRGKAAGSGPRVDLSLRPSVVVGKHLQQLAFEDVEEGMKIKG
AVVRVEPFGVFIKIQGSDLTGMSHISEASDQRIKDLAKAYEPGDVVKALV
LKVDRERKRISLSLKASHFKGEEDWSDEEEGRDSGFSMEEEESECGEEES
DSEDMEHEDGEVDDDEPENFKVPLVYSSSDDEHFKDDDENDEEEGGMMEV
DGEDSSKDEENEEEKDAKKIKGKSTSKAPSSTSISTASGPIFHWDDFDLG
LGFSVAGEHTASASEENESDDDHDDEDEGGNSRHRSSRKKAAQRKRDEEE
IRRREERLLDPDATPESIEDFERLVMANPNSSLIWIRYMAFHLSLADIDA
ARAVATRALKTIVFREEFEKMNVWVALLNLENRYGTKESVLATLEKAAEQ
NNPKHVYLHAAEMYERAGKASDAEELFKNILTKRFKYSKKMWMQYHLLAL
KRDPTSATELLRRSLQCLSRHKHTLVISHFAQAEFEHGSIDRGRTIFEGL
LSSFPKRLDIWNMYVDKEVKTGHVDSARRLLDRMCTLGISAHKAKGILKK
YMQLELAHGDAASVERVRDRAKAFVESNMSG*
back to top
Synonyms
Publications