jgi.p|Nanoce1779_2|593312, gene_5963 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593312
Unique Namegene_5963
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:196291..198864 -

Link to JBrowse

Properties
Property NameValue
TranscriptId593398
ProteinId593312
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:196291..198864 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008812choline dehydrogenase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
GO:0050660flavin adenine dinucleotide binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00890NO16G00890Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593312mRNA_5963-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593312mRNA_5963Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|593312

>mRNA_5963-protein ID=mRNA_5963-protein|Name=jgi.p|Nanoce1779_2|593312|organism=Nannochloropsis oceanica|type=polypeptide|length=590bp
MASSTRCFGDAAAALLLCVFFLGSTTAGLFGPAQPADEYDYIVVGAGACG
AVLATRLAERGQKILLLETGEDEHLNPLTRWGYFFPSGAYSHLYRNYFTE
PEPHVNNRRLYHQAAKALGGGTAVNAMVWTWGDRKDWELIDLEGWSFEDV
YPYFLKSENYTGGPSSFRHSLSRGHDGPITLTSFVPNAATTKAVETAAST
FDVPVEVDNNGGQHESAAVVQRDFKGATIDTGMRMGTFMAYLRPALASFP
PEQMNVLTRATVLKVLVGEVQMKEGGGTELEALGVRYLHDGVCHEAFAKK
EVLLAAGAYNSPKLLLLSGIGDKSHLDEVGIDCILDLPGVGKNLVDHINP
GSLLFTGPPRKDYDANIVAAYTRTGVVGDLTPDVELGFIMGPPVEDPALW
GSVPSLYVFYALWLLHDGEGSVTLKNKDPLEDPIIVSGYLRTPTDLKRLV
RIFRMLVEWAGEFSRKSGLRLEQQGSGGNAIMVTTKSTDEEILKAARTVL
STHWHAAQSCRMGDASKDPAVVVDTKFKVVGIDKLRVIDASSQPVLTNGH
PMAALVMMAERAVDFMLGGKEEVKGRVVERKKKEGRGKE*
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Synonyms
Publications