jgi.p|Nanoce1779_2|639981, gene_5904 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|639981
Unique Namegene_5904
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_14:3540..16058 +

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Properties
Property NameValue
TranscriptId640067
ProteinId639981
Product nameTransketolase, pyrimidine binding domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:3540..16058 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008324cation transmembrane transporter activity
GO:0016624oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL018ncniL018Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO16G00270NO16G00270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639981mRNA_5904-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|639981mRNA_5904Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|639981

>mRNA_5904-protein ID=mRNA_5904-protein|Name=jgi.p|Nanoce1779_2|639981|organism=Nannochloropsis oceanica|type=polypeptide|length=1715bp
MPETGGTGSSEDVGAPNCSSPSKRPPPLSNNPRPKSGVGLEPLTPSAFAA
LTTLPIFMHPQQSYYLTPAPARKQKRKKDKGSKEAGKSKSSSSISSSSSK
KEGGGCSHDHGRGGHEHHHHDHHHSHHHRTHESAATANSTEAEDKETGRQ
SVSITPNACSGQGSHAHADDLCKAEVHQHGHHYHQHKQQHEQQQHYVLAD
PLPPKAPTQTLSPHHHKAIIDAAMVGGKPMTKWEAFRNKWLSGPSRPFAI
MMLLTSVYLVAELAISVVTGSLALRADSFHMLSDVMALGTAWWAQVLAKK
GPNDKATFGWGRAEVIGALVNCAFVLGIAVEIILSAAEQVLDWSKFGSAR
MEDQRMTSSFMIYMGITGLALNSLGGDVADSKGVELPSSRFHDIEEGGEG
EEEEEDGLESQSQTPSQTPTHRHSHGEKGGKTKKHVNLNMKATFLHLLGD
ALGSFSIIISGLIIRYGEPVLGSYGMLADPICGLIIVAIILFTTVPVLRQ
SCRILLNFTPKGLNLASLRQELLALPHVLDVHALHVWTPSSGAELQASMH
VIMSSRGAKHEADEHLEDNTSLPFEKDETKQAPVPKGLTTTKRIRALLRA
AGITIMTVQTEIIPESIAALPLPDGYRYRCLHEDESQAQYHHQETPSASA
AAAAAAAGAAFNASSSSSSTSSTATSTTGGAGVSASDPALSPALPLSSHC
VEDDYVTCTITAATPHVGRGGRRAHFAASPSPTHARGGDEEEGSSRTASG
GSSSSSSSSSSSSSSSSSSNNSSCNEERGHLAAGAAHADDGIWVSIAYEA
AAAHLSALSMQGAQRLLEAFERYGHHEADTDPLGLTSIRDRPELDPLIYF
PPDATLNTSLGPSSLPSSTPSSMPIGTIETYTHRLRAIFCGGVGFEYAHL
DDGREREWLRERIHQLFLPPPSSVLSPAYRINAAALMMQAQAFEEFLATK
HPSFKRYSGEGAEALQPCLDVIFREAARGGVRDVVVGMPHRGRLALLVSQ
FGYPIRRLLHKIEGNTEMPAGLEGVVDDVTSHLAASLDKDFFLFPSSPPS
PVPGTGEGGREGGRIIGPVAVGKTYAKQADQRLGGREGGREGGKKGALCI
QIHGDAAFAGQGVNQETLLLSQLPGFRVGGSVHVIVNNQLGFTTHQRDEG
RSSLHCTDLAKGLQSPIFHVNGERIDDVIKVSKLAVTYREAFGKDVFIDL
LCYRKHGHNEVDEPAFTNPGMYKAIRDPTRHPPASLYTAQLQAEGLLTDA
RVEKLRGLFSAHLSREHHASLSYDIELEANAPDTGKGKWRKMRSANGSDR
DRRDATGAPAEVLRHIGLASVAAFPETPHLPPSSSSSSSSPPSFSLPSPT
IHPRLNKSFVQARLKMMETGEGIDWATAEALALGSLLAQGFDVRLCGQDA
GRGTFSQRHFLLTDQETDERICPLAAVPGSTGRLEVINSPLSELAVLAFE
YGVSLEDPMRLVLWEAQFGDFANSAQAVIDTLVAGSEAKWLRQTGLVLLL
PHGYDGAGPEHSSARLERFLQLSNDHPLPSPPSSSSSSTSPPSSPPPVNM
HILNCTTPAQYFHALRRQLLRPFRKPLVVMAPKILLRHPLAVSSFSDMDM
GTAFAPVLASTLDGKPWKEGGREGGKEGGVKTVIFCSGKIYYDLLREGKG
QRDVDPSSTLLLRLEELSPFPAPFLRPFLRPSLPPSTSFLWVQEEPLNAG
AYAQEIYLESCGGG*
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Synonyms
Publications