jgi.p|Nanoce1779_2|38418, gene_5825 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|38418
Unique Namegene_5825
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:654465..660304 -

Link to JBrowse

Properties
Property NameValue
TranscriptId38504
ProteinId38418
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:654465..660304 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016887ATPase activity
GO:0005524ATP binding
GO:0015662ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02420NO14G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38418mRNA_5825-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|38418mRNA_5825Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|38418

>mRNA_5825-protein ID=mRNA_5825-protein|Name=jgi.p|Nanoce1779_2|38418|organism=Nannochloropsis oceanica|type=polypeptide|length=1508bp
MARPFQQPRWTGKRILSLQLYQEVGRLFGGLISWEHLPFVLLYVVVLQWC
YTTMGDPYLKALAKAESEGVALPHTVEHLRASAAVFLLKTTPDPSAPEKE
TPFSFWGDPAVEPPVPDYYLPSRYLPGFWPCFALGVVMMLHALVLLLQVW
LVDFRCWVRYRPVGSVGEATHVKIVPRAHRGKKELLVLEKGGLGTWFTLQ
RRKYLYDFKEGLFSKVRCKVDWPLEFFGRWRGFASDAEVMDAQERYGKNL
FEISLPAFADLYKQQLVSPFTVFQLFCVILWCLDSYWQYSVFTLFMIFSF
EASVVMQRIKNLNVLKGMDNKILDVLVYRNRRWEVTRTTELVPGDVFSLV
KSKENDGIVPCDCLLLRGSAVVNEATLTGESIPQMKDAVPCQAGQGGEGG
GKGEVLDIKSGTGKVHVFFGGTRLLQVSGGGENNTVEVLENEQRVEEGMP
RLHTHEDEEEEDDDTDSLPPLEPDQKEEDVRPPSSNLDNDSIDPPPDSGC
VCYALRTGFSSSQGKLVRMIENSTEGVRTDTRDTALLLLLLLVFAIAASG
YVLKKGMEAGDKSKYQLLLHCVLIITSVIPPELPMQMALAVNSALITLMK
MQIFCTEPFRVPAAGKVDVCLFDKTGTLTTDELVAVGVTDMIKKGGRGGG
GGGEAASLGLTAMPEAGAAATVVLGVCHALVLVEGKVAGDPIEAAALKEI
KWEVLERKGGREGRGDGGKQTTVCRPLPAQLAGRGLASFHVDGFGLAASM
EIVARHHFSSKLQRMSVVAISSSSSSSSSSSSSKALVLVKGSPEAIAKLL
SPSTAVSLPLSRYHQVAAGLAKEGMRVLALAYKEVEGAKEEIARVANNRG
AAECDLRFAGFVAFTCRVRKDTAAVIAQLKEGKHKVAMVTGDALLTAVHV
AKQVGICRAVGKKGILILEAEGGEGEERGGKGRVFWKSYETGEEFEGGRF
DPEQIPVLALGYDLCTAGIPLAVASNVHPTLRKHLEHFVVFARMTPDEKE
GIITSLKDCGRVCMMCGDGANDVGALKQADVGVALLSGFGDMNVDRGTTN
AVTDAPSLPSSSAGRTAIMTQAQLEELQRMKPSEIKRKLRALGVAPEDHP
QVVEKSDLIRLYQAAVQRKAARDHDAKNARDLATTTAGAAGAGSIGQKRG
QPKTPQEMRAAQEKERRELMMKKQEELKREMEERTARGESFAMIKALMAV
YKKEAASAKEKRAQMVADSGLTASAAKMAAMMEEMDTGEGGGELPMVKVG
DASVAAPFTSKIPSIRGTVDIIRQGRCTLVTTIQMYQILALTCLISSYSL
SVLHLDGVKYGDYQMTALGILMSISFVTVSRAKPLERLSGVRPFASIFHP
ALFLSILGQFALHLVCMMMAVRESKKFLPADFKVEVEGEFKANVINSVVF
LVSAVQQVSVFVVNLKGPPFMSGLGDNSPLLYSLASTFVLTFLLASESIP
QLNKFLQLVPFPTPQFRNWVLMILGEYGGVDDEGWSAACEDFGGNHRRDL
VFVPGRS*
back to top
Synonyms
Publications