jgi.p|Nanoce1779_2|630575, gene_5806 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630575
Unique Namegene_5806
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:613091..619129 +

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Properties
Property NameValue
TranscriptId630661
ProteinId630575
Product nameputative DNA topoisomerase II
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:613091..619129 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003918DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006304DNA modification
GO:0006259DNA metabolic process
GO:0006265DNA topological change
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02270NO14G02270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630575mRNA_5806-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630575mRNA_5806Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|630575

>mRNA_5806-protein ID=mRNA_5806-protein|Name=jgi.p|Nanoce1779_2|630575|organism=Nannochloropsis oceanica|type=polypeptide|length=1595bp
MENIPKTKKAANGASKAIVTAATAKAPLGESSSSGNKTGGGEGRSIEQIY
QKKTQLEHILLRPDTYIGSTETVTQPMWVLDSHRKKIVQRNISYVPGLYK
IFDEIMVNASDNKQRDPTMDTIKITIDQENNTISVWNNGSGIPVVIHKEH
QIYVPELIFGNLLTGSNFDDGMKKTTGGRNGYGAKLANIFSTKFTIETAD
KSTGMSYKQTFRENMTVREEPEVGTLGGKKGEFTCVTFTPDLARFKMESL
DDATVGLLSKRAYDVAGCASGFPGKPLQVYLNGERLGLPTFLDYLKLYEG
LEPPVAFERVNPRWEVGVGLSDGQFQQVSFVNGICTVKGGQHVNFVADQV
VNKLTTLVKKKNKGQEVKGHQIKNHLVVYVNALIENPAFDSQTKETLTTR
PSAFGSGCNVSDKFLKTVEKSGLVDNVVNWAKFKQDEQLKKKGGSKKSKV
MGITKLDDANFAGTARSSDCTLILTEGDSAKTLAISGLSVVGRDYYGVFP
LKGKPLNVREAAHAQIVKNEEIQNIVKIMGLRFGVEYTDAKSLRYGHLMI
MTDQDHDGSHIKGLLINLLHHFWPSLLKLPGFLQEFITPIVKVSKGTNRS
EAFYTIPEYEQWKERTNQGQGWVVKYYKGLGTSTAAEAKEYFSDLDTHRI
DFKWEDEGDGDMIDMAFAKKRVEDRKEWLRGFTKGTFVDYKVVSMSYDTF
VNQELILFSMADNQRSIPHLMDGLKPAQRKVLFACFKRSLKKEIKVAQLA
GYVSEHSAYHHGEASLNGTIVGMAQNFVGSNNIGYLFPSGQFGTRIMGGK
DAASPRYVFTRLEEVTRALFHLEDDLLLPYQDEDGQVIEPEYYAPVIPTV
LVNGSDGIGTGWSSTVPNYNPRDIMANIRRLLKGEEPVEMHPWYRGFTGT
IEPKGGRDVGSYAVMGTVRRVDEVTVEVVELPVKRWTQDYKQFLESMTVG
VSDEKGAFVKDFKERHTDTSVYFVITISETAAPELLVDDQALLKRLKLEG
SISTSNMHLFNVQGQIVKYESPLAVLQEYFPLRLSLYEARREALLARLDR
EWRRMDNKVRFILSVVDGSLVVSNRKKAELLQELARLGYELFAPGATAAG
EEGVEGEPGELGRGYDYLLSMKIWSLTLERVEDLREQLTEKANELEALRS
MTAADLWEQDIDVLEERLDEYEEDLEFEPAYVLAALNGKGKARKGGGRKA
RKAAKKGKSKKFVAVDSDGEPLSDEEEDDEDSEMEEEEEDSDYAPSPKRK
GGKAKATPKTVAAASKPSVAAPRVIVPVRAPPKPPAVPKQAAAAKKPAAV
AGAAAKRGGKKTKKVVRSDEDESGEEDEELGGSEGEDVQVLSLAERMRMR
MAVSPTPRGGFGGGSDGEDDEEENGLSSSPVAPREAPPPRRAAAKKVVYN
VGDADDDSAEEEGGKEDVSDSDLEDEFMIVSPPPKKAPAAAKGKGNAAGA
RGGGGAVKRATKKNEPVTGGARGGRGKGKEALFSPMKDTSPAVVKKARKA
PAAAASKARKPIAASKKKGRKTDSADEDEDEEEEENSMIFSSPVVPRNVA
PRRAAAAKKVVYDEDEDEDEEDEEDEEEPDSEFEEEDDDSEFEG*
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Synonyms
Publications