jgi.p|Nanoce1779_2|555647, gene_5775 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555647
Unique Namegene_5775
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:550647..554065 +

Link to JBrowse

Properties
Property NameValue
TranscriptId555733
ProteinId555647
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:550647..554065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004620phospholipase activity
GO:0016298lipase activity
GO:00187311-oxa-2-oxocycloheptane lactonase activity
GO:0018732sulfolactone hydrolase activity
GO:00187333,4-dihydrocoumarin hydrolase activity
GO:0018734butyrolactone hydrolase activity
GO:0008270zinc ion binding
GO:0004806triglyceride lipase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02030NO14G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555647mRNA_5775-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555647mRNA_5775Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|555647

>mRNA_5775-protein ID=mRNA_5775-protein|Name=jgi.p|Nanoce1779_2|555647|organism=Nannochloropsis oceanica|type=polypeptide|length=729bp
MLGVADPGELLRVAELRARAAKGDEEAQYILAARFCPPPFQKRDRCTKCR
KAFGVTRYRHHCRHCGESFCQEHSSSRHPIPKIGYMTPARVCAACKGQLE
EEDLKDRIVWRMVRIEAFLQGKLIPYFAQGDTTQLDRALRTVGEWVSAAA
RNAPVSVRSTTALAGEALELFGRYGYKGVAGVLLRQEFVEAVELLKEVSG
VDVAWPVTGGRLSGAMYYLLARGRGERGRHPDREQEEHRGCPPVSEALLQ
DLLDVAPLALHFAYCDSLVEVQLRAQQQGWRLLFAYNPQQHRRQPSFMMF
CHLTEKEACVVVRGPDRVQDVLSEIQGLPLPFPHAAGGKEGGVGKEGGWA
RVSTEWMASCGPAEAAQWLFSETYPHIRRLLSEGYSLTLVGHSTGGAVAA
LLGVLLREEGITEGVRCYTFGSSACVNKKLAQVCETFATTVVLHDDIVPR
VTPTGVRGLLKDLLLARETAEQHWQDDVEAIIVRSQGRWAPRWRRREGGK
GGEGNATGERSRSLSFVRSEEGEEGGGGRGEEGGRLNGWREEGGVDQCKD
DRDEGEEEEEEEEEEEGDEECGVLVEDTTLPELYPPGRMVHIFSSRGVYR
ACMPPRDFVGLRRISLQGNLLNDHTPSSYFAALCEVIDVRKAPIPPPEWE
GFSDKEACACCAVDLTWQGGAASEAQRDREKHNCRCCGQLVCDSCSGHRM
ALPSIGLSLPARVCDRCFFGGKQSATTV*
back to top
Synonyms
Publications