jgi.p|Nanoce1779_2|542163, gene_5757 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|542163
Unique Namegene_5757
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:503985..506934 -

Link to JBrowse

Properties
Property NameValue
TranscriptId542249
ProteinId542163
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:503985..506934 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0004386helicase activity
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01850NO14G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|542163mRNA_5757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|542163mRNA_5757Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|542163

>mRNA_5757-protein ID=mRNA_5757-protein|Name=jgi.p|Nanoce1779_2|542163|organism=Nannochloropsis oceanica|type=polypeptide|length=880bp
MGRNDKNDDNSEGGDEELYFDDTAPKKDFDYEDDIDDDDLGDSGPPISSR
KGPGGKGKRVAKGTFQSLGLSKDIFSGVNRMGYKLPTPVQRKSLPEALAG
KDLVCMARTGSGKTAAFLIPVLERLQSHSPRIGARALILSPTRELAMQTV
KFAKSLSHFTDLRVALLVGGDSMDDQFEALSRNPDIIIGTPGRVMHHLQE
VPDFSLASVQVAVFDEADRLFEMGFAEQLKEILRTMPEERQTLLYSATLP
KMLAQFARAGLRDPVLIRLDMESKVSEQLCLGFFTVRSGNKTAALLYLVR
EVLPRDKLTIIFAATKHHVEYLQEVLTEVGLPCSAIFGAMDFDARKLNLE
RFRQGRVKYLIVTDVAARGIDVPLLDYVINYSFPPLPKLFVHRVGRAARQ
GRVGAAFSLVDPEELAYMVDLHLFLGRPPQNVYKAGGYEGYTLAQLTPDL
VHYGVLPQHLLDEENESLRLLTERNGGVLNTQWRVCENAMKQYRRTRPDP
SKAAIRRAKLLVDGEEGGLHIHPMLLGSDPIRMAAGGSVAEMRAKDEMVK
MLQGFRPQQTVLEVQRSDAGSLYKGLPAGIKVMRDIRKEHFGAIKRKRED
VAKKRQLPQQGAEEGEAGGAKAKLSKAARRKIKKHKCETEGLSDSGEQRG
STCKSARSHTGSSTSYKDPRHFIEYGVSEHDQMVEDRLQPRSVEKGSEAL
LANRLEEALLDVQPDEALEMMKRKRIMHWDARKKKYIRATMSEMGEARGN
QKLRSESGVTLSGSSAKKPTGEIYKKWQKKTNKTLALAGGDEDGDDGAKG
GSDERGAVVETGRGTGGRRAKEELKTAGQIHKERKVKEKERLRLAKKSVG
GGRGSGGRGGGRGGGEGRGRGGFKMMGKR*
back to top
Synonyms
Publications