jgi.p|Nanoce1779_2|528655, gene_5679 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528655
Unique Namegene_5679
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:304889..307811 -

Link to JBrowse

Properties
Property NameValue
TranscriptId528741
ProteinId528655
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:304889..307811 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
GO:0005524ATP binding
GO:0016887ATPase activity
GO:0003682chromatin binding
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01110NO14G01110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528655mRNA_5679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528655mRNA_5679Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|528655

>mRNA_5679-protein ID=mRNA_5679-protein|Name=jgi.p|Nanoce1779_2|528655|organism=Nannochloropsis oceanica|type=polypeptide|length=921bp
MINSLEPWLVPDIIDFLIAKISGFGKEREPAISLLTKLDAAFIRRKLPDI
LQPVINMCTDTSKKVRDLSLKCLEHLVQTNGNSDLDKVIPGLVQALKDPN
HTVQAIDDLASCVFVQDVEAPALAVIMPIIRRGLRHKQTEIQRKSCVILD
NVCRLVDDPKELSIAIPEIVPLVKYCAENIPKPEAREVAGRALKTILDHY
DEKLVLRKWSVEEVTAMIKKHGEPTEHIVKCTKNLCDAYHFEKKDWERVY
GAKHLDLCAKVLNDCEVLASPNTIFFEDTEEGQDLYKGEFSLAYGTLTLL
RKTRLHLKRNRFYGLLGPNNCGKTTLMRAIDHEQIDGFPKKTELKTLFVE
HEIAEREVGEDETGYPIFNTDLSGTDWVVDYCNTVVKVTPAVTREQAAAA
MAEMGFGKDRAADGDMPVTTYSGGWKVKMQLVAAQLINTDLLMLDEPTGH
LDVKNIAWLKEWLKSFLAGGGSIITTSHDSEFLQEMCTHIIDFQKKKLVT
MKGNLNDFVEKFPEKKSYFVLTNEKVRFVFPEPGSLEGVKSLSKHILKMT
GVTFQYPTRDKPTVMDICLEVSRVSRVAVIGPNGAGKSTAIKLLIGELTP
SKGVIVKHPNMRLAYVAQHAFFHLEKHLNETPAQYIMWRFAGNEDKESLD
LLNKKKEVEKEITKFFIREGTTLCQCYSPGEEKLAVEPEAIISRHEDKKA
KTKEYEVKWRGKSTDCNLWVKREVLLMMGAEKMVQKFDEKMAAESGLQFK
ALTTSAIEKHLADFGIDPEDASHTLIKSLSGGQKIKVVMAACFWQNPHII
VLDEPTNYLDRDSLGALVQAIHDYKGGVIIISHNREFAGAVCQEKWIMDK
GHLRREGESVAMHEEEEKKEELGDKVVIDALGNEIKVHVFRLWFGCPPSP
PPSLPASLPPFSLSFQFFSF*
back to top
Synonyms
Publications