jgi.p|Nanoce1779_2|32634, gene_5618 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|32634
Unique Namegene_5618
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:133189..139388 +

Link to JBrowse

Properties
Property NameValue
TranscriptId32720
ProteinId32634
Product nameGlycosyl hydrolases family 31-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:133189..139388 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030246carbohydrate binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32634mRNA_5618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32634mRNA_5618Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|32634

>mRNA_5618-protein ID=mRNA_5618-protein|Name=jgi.p|Nanoce1779_2|32634|organism=Nannochloropsis oceanica|type=polypeptide|length=937bp
MHDFISSFFLYRPVHYVDEIIRIITIIIIYTYTYMSSTSFSHLLPHTGSS
TLVANRLGMAWAIEEAMEGGVEEGLFGFGERFAGTTNKRGHELYCWAEDG
SWVLGKEVRLPKERSTYVPIPFLLSSRGYGLLLNTTYRSDWRLDSKEQRR
EYQRKEGESEGGVSAAMEEGRGEGGVVREERMRRIRSVLSPPNGIEEDEE
EEEEEEEEEEEGRPAFDFLVESLSTQVLLFLGQTPAESLSLFTGPVVAPR
RSLIPPKYQFGCWNQFANEFNDTSFEEALVRFQALDIPSSVAIDPVHFFP
LGSEKGNEKEIRRRNARVRAAGLMPVAYFNSMLDQRYTPEYQECERDNFF
LHRPNGSLYTFAYKGAGPDAFYASLLDFSHPNTTAWFQAKMQEGLDLGFS
GWMYDYGEYVSPHTLTYSRLSGAAAHNLYPLQYQRAAFDFFMSKQPPTSD
PRFAPPFLYYVRSGYTGSQAWMWAHWTGDPYAGWDEDSGLAAQVKAQLTL
GLSGIPFSGSDIGGFVWEEPPSEELWLRWTAVGVASGMMHTQTGGTSLFK
LPKTHVHDSEEGSRVYRKFAKLRTALFPYLYTAALEAHTTGLPLLRHHLL
SFPGDSKAWSNPTVADSQYLLGPSLLLAPVLLPNQSIQVVYLPLDCHKTL
PPSLPPSPSSSNEWMDVSSGLRYEEDDGRFRIAGRQRLWKGGQSVSVAAP
IDTLPVFVRAGTIVPTLDPSVWCMSEEEEEEGKKEEGGREGGKRRRRRYG
TMRHVLHLWAWLDEGLSSTSGPQWDGGAYTIHPYPASSLSSSIASSLLCT
FSPPSASDAPFSNTFILQLALPLRMPLGKREGGREGGWSVRGVKRLSSDV
GGKEGGHVVDIRQADGGDGGGWRHVVHVDEDGWDSGRKEGGEDLWAMDEE
EQGVFWLRVTSSGMKRGTEGGSDGGREVVRVLLTLE*
back to top
Synonyms
Publications