jgi.p|Nanoce1779_2|556526, gene_5441 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556526
Unique Namegene_5441
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:428611..433278 +

Link to JBrowse

Properties
Property NameValue
TranscriptId556612
ProteinId556526
Product nameglycoside hydrolase family 2 TIM barrel
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:428611..433278 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030246carbohydrate binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004565beta-galactosidase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0009341beta-galactosidase complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL015ncniL015Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02700NO12G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556526mRNA_5441-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556526mRNA_5441Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|556526

>mRNA_5441-protein ID=mRNA_5441-protein|Name=jgi.p|Nanoce1779_2|556526|organism=Nannochloropsis oceanica|type=polypeptide|length=1204bp
MAVKDKLTEIFEPLKYPGWDKPLAPWTTTAWPNAFILPLFLFTSRRASIV
RCGLGILLAVAFIVLIEHFQYSLLWGVLLLPTALALVWSSYEALLPRNDW
ENPQVFGHKKLPAHAPLAYHTSIEAARKAAASFASRAQAENIVSLSGPAS
AGQWRFKYSPTVASAPRNFYDPSYSVNGWDADVPVPGNWQLCKDKATGEP
RYDIPIYTNFRYPIPLHPPYVPKNNPTGCYRRTFDVPAGLVKSGGRVHLI
FHGTGSAFHVWVNGKMAGYSQDGKLPAEFDVTSSSSKESNILAVRVLRWS
DGSYLEDQDHWRMSGIERDVELVFVPGAGSGFSLSDYTAVARLDSHYQDG
HLDVTAQVSMHGLSAGSFQVQALLYEDSENGPLVGKAAVVKSVTSTFPPR
SSSFSSSSSSSSTVEVFVSIPIKNPRKWTAETPNLYTLVLTLSTEGAGGG
VLQQAESCRIGFRTVEIKNCQLLVNGQALVVAGVNRHEHDPDTGKVVDEA
SMVQDILLLKRFNFNAIRASHYPNHPRWYELCDELGIWVVDEANIETHGM
KPIGRISADPAWREAYVERMVRMVQTHKNHPSIIIWSLGNESGDGVNLRE
GRDAIKRLDPTRPVQYEGGGADMCGTGRTSLTDIQCPMYPVPKASVQMAQ
SKADERPVILCEYSHAMGNSNGNLFKYWEAVRALPRFQGGFIWDYVDQGL
RKFDHKTGRSYWAYGGDFGDANGPCKGHGQFCINGVVFPDREPHPVMWEA
KFLQAPVAFHSSAAERDGERGGRRPETFSVGVENRYGFLGLGHLLFEWAV
KSDCGFSVSSPFKKRDKQVSSGTGSGSSSSSSSSSSMATAWSTAWVELTA
SLKSDTPWAPKGHVVAIQSLPLDMRGEEREESKGGVPAVITVEGKEDKEG
WRVVFGKNTGKILEYMVRGVHLLVPLSGGPVHAFLRAATDNDRAGFPTLS
YQARWKRVGLTGEGLLTTVSDVTPVMQSPKRVEILVRSTVSAAKYGPLLD
VQTRYIIYGSKDIKVAVKVVSLYEKQAAEPLHLPRVGLAMQLPREMSEVI
WFGPGPQETYSDRKTGGILGVYHSHVRDLHTPYVVPSENGGRADVRWAAL
RDPGRGEQVHVPGAFQFNASMHSVAELERAMRTYELPRWEEVEGVHVHVD
HRHMGVGGDNTWEPDLVHSEFLVPCVGTWEYEVFLSPLEGEEEPAVKACR
VLE*
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Synonyms
Publications