jgi.p|Nanoce1779_2|65420, gene_5396 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|65420
Unique Namegene_5396
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:334476..337501 +

Link to JBrowse

Properties
Property NameValue
TranscriptId65506
ProteinId65420
Product nameWD40-repeat-containing domain protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:334476..337501 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0032040small-subunit processome
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL015ncniL015Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G02310NO12G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|65420mRNA_5396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|65420mRNA_5396Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|65420

>mRNA_5396-protein ID=mRNA_5396-protein|Name=jgi.p|Nanoce1779_2|65420|organism=Nannochloropsis oceanica|type=polypeptide|length=670bp
MWQYSSDGELLASVAPDNRIRVYDAATGTLRQKYIEKDHFAFQYTCLAWV
RGVIWNDKHANKVVPGPKSGLGILVLGSDQGHVSVWDLTRGVLARRLGEG
QNLKRVTGVAFAASSATLYSTGAGDADVLEWDLRTGECSRRISGDKHGAS
ALALDPAESATLAVARTRIHLLDVASGERRKKIASGHAAAVTRMSFSDDG
GFLATASQGARYVNVFDCRDKKKNREAVATLSLDGCPTSLALRAEPMSAE
ENAAIVFTVLACCDTGTVRLLRQIWSPSQATRCSDTANGTGIAAATQVTG
PPTSMYVVTAEGRKENENISALTACFLPWDGDGGPLAWRVALVCGPECAP
SFETFSFATGKGVDELLPKVVLGDGRNNVRTAGEDETSAGTKRKRKEVKT
LEAQDPASKKVATDGSSGLGNDEALQLATASRTSSNSEEEDEDAKTIGRR
LQTITKDLEQGRCREHEGAMVEGAGVRRAGPKADSLVTVLSQALKSGDED
LLEQCLGVHDAHVISNTVQLLSAPLTLPLVDTLVRKLEKRPNRAATLCPW
VRFLLLHHTSYLVSVPGLDQRLAGLHKLVTRRVTVLPRLLGLMGRLDLML
SQISKHGSGHQQALQDKDKAAIEVYVDRDSDEEDEDEDDENEIAGLEGEE
GESSVEEEGGKDDDDSDED*
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Synonyms
Publications