jgi.p|Nanoce1779_2|577620, gene_536 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577620
Unique Namegene_536
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:1296395..1298761 +

Link to JBrowse

Properties
Property NameValue
TranscriptId577706
ProteinId577620
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1296395..1298761 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004821histidine-tRNA ligase activity
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006427histidyl-tRNA aminoacylation
GO:0006412translation
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577620mRNA_536-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577620mRNA_536Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|577620

>mRNA_536-protein ID=mRNA_536-protein|Name=jgi.p|Nanoce1779_2|577620|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MYNPGNIKRYHIAKVYRRDNPAMARGRFREFYQCDFDIAGTYPPMVPDAE
VLTVAVEILSALPIGGFCIKINHRKILDSVFEICGVPAEKFRTICSAVDK
LDKESWETVKKEMTEEKGLHPAVADRIGTFVTFKGAPKELHALLLAQDVF
QGHAVAVAALAEMETLFGYLEAMGSLHAISFDLSLARGLDYYTGVIYEAV
LTDKESIVGSIAAGGRYDNLVGMFSVSGTETPCVGVSIGIERVLAIMEAN
RLKALKAKEQEGVREDGAGSTSHPRRRSPFVEVLVATIGAGMLPHRMRLA
RQLWTAGIPAEYLPQENPKLKKQMEHAHENGIPFLVIVGGDERKKGVVKV
KDPSRPQEESEEEVKEEDMAANLISKGARFVPIPEGVSGV*
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Synonyms
Publications