jgi.p|Nanoce1779_2|591909, gene_5254 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591909
Unique Namegene_5254
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:859119..862771 -

Link to JBrowse

Properties
Property NameValue
TranscriptId591995
ProteinId591909
Product nameBeta-lactamase-like protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:859119..862771 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00427813'-tRNA processing endoribonuclease activity
GO:0016787hydrolase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03370NO11G03370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591909mRNA_5254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591909mRNA_5254Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|591909

>mRNA_5254-protein ID=mRNA_5254-protein|Name=jgi.p|Nanoce1779_2|591909|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MSEQQQQQQQQQQQPQQPQQPLQQQQQQQPQQQQQPQQQSQAPRVSKRDQ
IPVVVGKRGGNPTQPNASTVRRRKGLPRMHTLVTADLRENSGLVVPAARS
DPLDDAEQGLHEDEEGREEGSPQGLPPSTPPLSLSPDEMTFVVEKGEQAG
LPPPSAIGGMPSYSMHNSTGCDLELCFLGTASCVPSVSRSVSCIALRASG
STWLFDAGEGSQVQVQRSQIRPSRINKIFITHAHGDHSFGLPGMLCLMGM
EKEQYDDAPVEIYGPEGLRMFLRTIIRYTLSRIVPKYRVHEICGIPSYHK
KRGQPPPMASEAAMPLDTRFNEVEGGQNLYPDENGSWTLVEEGEMKVQAA
PMVHTVPCVGFVITEKDKPGRLRAEYVRPIVERNKEGLLQQGLSDPNKIF
RLLKTLKHGEAVNLPDGTMLRAEDVMEGPKKGRKIVICGDTSDASGIAEL
ARDCDVLVHEATNAFLLPFDKGTYMDVERFARAHGHSTPQMAGHFAQRVG
AKRLVMTHFSPRYKGDLSPESLAIMKRLEDMARKTSKLKADQVLAAHDLM
LVPVPSPHKMAVVGLG*
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Synonyms
Publications