jgi.p|Nanoce1779_2|566463, gene_5220 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566463
Unique Namegene_5220
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:755935..760277 -

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Properties
Property NameValue
TranscriptId566549
ProteinId566463
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:755935..760277 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:00084083'-5' exonuclease activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566463mRNA_5220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566463mRNA_5220Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|566463

>mRNA_5220-protein ID=mRNA_5220-protein|Name=jgi.p|Nanoce1779_2|566463|organism=Nannochloropsis oceanica|type=polypeptide|length=1158bp
MPWRFWVASCADGEEGAWSVPASQKGDGAVYDEAGDENDGGTAVTVQQGI
DGGELPTHVSEPYCMPMQDMTAFSFVPGHVQVEENQEEFGKEVEVCDTDE
HARHAQTRHTPPYNGDNQAFIPHSLDEDYAAPKTEGEEGNDDEILPAIHP
VADDNNAAHMQAQTHQLYSSVQPSLNPDSQLELCKAKILDTLLPKARLLD
PLGGGVTHGEKWELASKIEHWLGCGFKASRSKNSTSSSGTLSRSVVDSSV
TRSSDICSCNASGDRASGGECDDEGEAADEGFATKLHRRKKKNKGKKRNK
GRKKYRGSGTGHVAVLTDAVTSLLGADLDASTGSRVGVLGLVCLLEKGVS
PLCLSTWLQALRASCCLNVLFPSSPSFPSSSLEYAHEDRQVITALLDRCL
SGIFHGQTREIRAKAIVSVLEATSPTIPYLRALSDPAGPPFVQRLLNGNA
GTAEVRAGGALGAYLRGPLSLHNHFFRLVLLSTPPEIALDILRRYQAQQG
PAVLKPLGMAEGLLQLLMARGLYRSAYLTALEMKLLETYPVVERVFREDK
IKKLVARGKWQFAVIMLEEMKERREKRKKERVERSEEGREQKEEEEQEQE
QEQRRSDRRDDPAGQLIHCLCVTLVRALMAQPGFLARADEIRKRYGVEEV
EGPSVEALRREAKEKEEKYMVLPWMPIAGAKGEGSAGKGGREGGGGGGGA
GAGGDGVGEKGGSDNGMLPLREPEYVGMDADREEIVDPAREAEEGVHDVA
AFDRDMGVVGKRIIFVDDRVSLGQATRALAEANRRAQEAWREGKPEVVGV
DVEWRPALYGRCEEEALEEVGVLEGEQGRRNGSVTSVAEADKVESSISSL
SSTSSSTVITTTERPSTSIPTITTTTTMTARGLGAGAAGRRVLDQPDEKA
SILQLATRNQAFIFDLWALCGGANTNSNKSDSNNNDPNNDEVGGSSPTTP
CLTLLQELDACLISLFEHPRLLKLGFGLSGDMQVLRSSWPGMVAFCSLRG
AVELGDLGVPGRGAFQCRGGAASSGQGKKGRGRGRGGGGGGFGGGGGGQS
RSLSALSKEWLGKELDKGEQVSDWDARPLSVAQMTYAAMDAWVLTAIFDE
ACRRDANRARWVWKERRRLIGQKQQNVDTEYPPCWERGSEDEEDEDEEDE
EGADFFV*
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Synonyms
Publications