jgi.p|Nanoce1779_2|566426, gene_5180 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566426
Unique Namegene_5180
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:663966..667679 +

Link to JBrowse

Properties
Property NameValue
TranscriptId566512
ProteinId566426
Product nameexpressed protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:663966..667679 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02790NO11G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566426mRNA_5180-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566426mRNA_5180Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|566426

>mRNA_5180-protein ID=mRNA_5180-protein|Name=jgi.p|Nanoce1779_2|566426|organism=Nannochloropsis oceanica|type=polypeptide|length=1238bp
MDPSEPVYYANRSTCLFELGKYTASCEDSKQASLLYRDKQQIGMISRAEA
NTAIGRLLRQSARAFLCINSTESLQAAKALLARTIELHPDPDAELLSMHA
GACQAVDEAFSLNAGEGSGPGYHMTKSSSSGSGVSHLGIGGGSCDYLPRY
RSPVVNGSTPYSCIGWEVALSGLAGRVPSPADTESPFSTHGGTFGDDDSD
SDVEEEGREGGRARGGGGAHGAIDLLRRPEGERCLSLLFGGLGDARQSLA
TFRDIYQQVGRSGGRLRYREMGLNMILNDVKPECLTRAVIMFKALAELGV
ALQEEARSRDGSGGIGEGGVEEMGGEIDPLDLMERSDAVAVAVYRCYHLY
LGAFLMPNEADWLQETLDEMSQSSDFGQQNSRQNPSPLSSMPAAAPSLAA
AAAASTSSLFSSNLGFSWLKIKAGKDREAVRGVVERWRMMCKTMDPRVMA
HIYQSSMQRPVEEGVREEPMVGTLNSNGDISGESKPDSMEDATGMSLEQQ
WRAQVREAMLEQIEAKDDEEINQMREAKGDTPEEKRAFLRDHWSQDVDPR
TLDLMRHLPAAHREIDFFHTTMLLPVPPPACAQGLGLMDKTQGRALHNLW
RPNVTLVSADTPLEAMVTGNLDEDHALSSSLTALHFCPFKALKLLLSQPG
DGTFLARHEAFRSAAVFFSEVALGLAGFLEAGTLSMEMFLGDVHDLGSTK
EPESLDRVLISNVPDYTTLLPSMIKLIPLLKTTPGAALKHSVLKFNANFT
DLPEYAHSMGLYVPDMSSLPTYLGVNHEYGGIWAHLVEWSRAQPLLLEGT
GEEREDAMEREKEEKEQQVGEGGTPRRTSSPAPFIFSTPLPPTQHLPPAP
DVQAWLSTVFLSIAMPLCRDCVQTHTEIRPLTLQAFFELCHYLVAHMDFP
PHNLAWVIEHVMRGELKTAAVPPDATPWSPHYTWRQHNLPRAVPTGAFAL
EMRTLAGLWQPKMGFRLCAPVGQRIPQPEDVTQLRLTVPWQQLRHEQQAE
GEAAAAEAAAIAQLKASGAPLAKVVGAALLSPALMAAHPDAFDPSQYHIP
LPRPRSNTSLATCSFSSSPSANAAHPRPAPEDKGLRPLLLSKETQKSGDV
HLFSCVRWDSKTSLVTLLLPKNDLRDLVRRGFHLCLLRTDSWHPLTKPFP
LSDDPALQRPHVHVYIQKMRDMGEIEDKEGDIGEAMEERGESAGSAMDVE
GVEATLEGIAGEVLREESGKFAEMSCEDHTMHKNRTF*
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Synonyms
Publications