jgi.p|Nanoce1779_2|556137, gene_5178 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556137
Unique Namegene_5178
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:655649..661452 -

Link to JBrowse

Properties
Property NameValue
TranscriptId556223
ProteinId556137
Product nameP-loop containing nucleoside triphosphate hydrolase protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:655649..661452 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02780NO11G02780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556137mRNA_5178-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556137mRNA_5178Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|556137

>mRNA_5178-protein ID=mRNA_5178-protein|Name=jgi.p|Nanoce1779_2|556137|organism=Nannochloropsis oceanica|type=polypeptide|length=1509bp
MEPAVPDGDKHNDSGAHLPPSRAHGGSQHGQAPPPSPHALIAPTVAALPP
SQLAPLQHQTIPSYDFINAPAATSCPLVHPYLPGVARPAPPQLQLPPQPP
PQGLPLSTVAQAWDATHPLPLNQPMTTVVSAPFPTPPQQQQPPSSSIKFA
KQPLLPYRTPAATAAAVCTPRPPQLIPPSSEQEPQQSANSSAVMLQPPLP
HHPPQDGISIAAITTLLPLNLLANPNAPPLPILPPCWHCKHEMEIRDHKY
TYRYRCKLFPFCPGQRRTFEPNPSVFLQLRSPELLELCVSFPDMPETAVA
FGANWLRAFLKKHNLIESVLHKAKAIRPVAAKDRGRGGPWEVVLDAKECE
SLTRILRTHPSLDLVREVPLSTLRFVIQLHDTAPTASIGEEGVGAGFYAT
PGEMERRYALLPRRFQKSLFEFQKEGVKFALRRNGRCLIGDEMGTGKTLQ
ALAIMACYQEEWPLLIVVPASLRLQWAEVVEDWIPFLRPADIHVVFGSTD
KLFATSECPPVVITSYEMLRNLEASMTHIGFNCVIFDESHKMATSRSHAS
PNKLTAASLRVASLASRVLLLSGTPSLSRPFEIYDQVRLLHADLLSSPQK
LGARETNKWEYGRNYCTGVHWQARMHGPPIAVAKYNGVRCGEELHFLLKN
AVMIRRLKKDVLAELPPLSRTIVRIEEGKKSKMLGHGGRTGGRTGGRTGG
GREEEKVRQEEGEKEEKENEREDEEEREEDTKKFVCRSDYHELGMSKLGG
AEEWLEDRFLEGWLDAGVVEGDQEEEREAGHLSVEASAPKYVVFAHHLSV
LDNLRATIDAVLRKHQAQRQLPFAWSQIGIQGSTPTDTRTELVKRFTHDP
FCRVALIGITAGGVGLDLAAASTAIFVELPNSPSWLRQAEDRLHRRGQRE
RVQVYYLVLPPGSLEDIVWENMRRLLRENTAVVNSREKAEELEVARVQEL
KASMSQPLDPKTNKGLLQKGFVHHHTQGKAPPYTILRNLWFEVSKHTGWV
HLHESPDGKKPLGVHVDPIDYHHLINDAEAALSSLPLLRQIRARAEEIIL
EGLPLYTQVAPGEKWQLLKLLTQFLKQSARIRNQVYGYVLQPVDGGLLEW
LRLHRSTAQERGRKGGQKGEMPPRMLSLRDPALGYRRHLTSRELFDPSRH
SSLTRHTHEPLCFCCGRVMRVPGGPKTLQDLVCSADCLAYFSCLSQGGFR
RQVRRRDRGVCEMCGLDTLRLLERVKGFACLKAREAAVLEDVPMIVERPA
LLARLVRDPKEGYVWNADHIEMVSEGGGLCDITNGRALCVLCHYEVTKEQ
RRLGLGRKKSARQRRVEEVRKEEWEMTQVNKIMKEEQIEEEMEEERKGNV
KEKGRKRAPKKMEKKPKESLKSELPGTGQWEKEGDDIKEMNERKERKQEK
EMGENEEPGKKEERKLKGFWKPELLWMEGKEDGNVDEEKTEDENCNYKQK
EEPEDSNSDTDERMDMCWQKRGWGHARHKHTKKLNCEGKETKEEGKKAAV
QQKKKQRL*
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Synonyms
Publications