jgi.p|Nanoce1779_2|556114, gene_5162 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|556114
Unique Namegene_5162
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:608247..615571 +

Link to JBrowse

Properties
Property NameValue
TranscriptId556200
ProteinId556114
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:608247..615571 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02660NO11G02660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556114mRNA_5162-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|556114mRNA_5162Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|556114

>mRNA_5162-protein ID=mRNA_5162-protein|Name=jgi.p|Nanoce1779_2|556114|organism=Nannochloropsis oceanica|type=polypeptide|length=887bp
MTTPLDPTVLTAIRAGMGSVRAPGSHDKVYKDECLYSFDTPFSPDGLYVN
LKTWGGVGKDFLSFDSGKTGNTLYVHLKYTKLPVAEESAAGNEAKAEAEA
ASECPTVLGIGVEGGFKLDSQKYEVVKEAALAVVSSPNGDAEPRVQRVVF
PNEELPEFLSRAVQVILDHQGVTSQTDEAAWLADEDPRPISKYAEDLMQL
ENGVKISSDPSTWKCADSGQTQNLWLNLSDGYIGSGRAQVVNGETIGTGA
ALKHFEATHGMYPLAVKLGTITPHGADVYSYAADEDCMVTDPKLAEHLRH
FGIDVMGLEKTDKSLAELEIEGQRWAFSRITEAGAHLLPLRGPGYIGLRN
LGNSCYMNSVLQLLFALPEIQEQYVGRFEELVKGERAAAVTDPAGDLLTQ
MCKLAQGLCTARYAPLATEEERKEAAENNDTNFTPSVEPRMFKVLMGKQH
PEFSTGRQQDAAEYLEHVLEKLMRAERMGGAGSKGENPFSTEGLFKYLVE
ERLECVESGKVRYAEKSDLFLRLMIPVEAAVNREEVRKFKERKQETEEEK
KEKKKQKLTGKEEQEVLPIVPFSACLDTFSQAEDLEDYYSSALGRKGPAQ
KRVRFRTFPRYLALQLKRYYVDTQTWQGKKLEAVVDVPEQLDLRSLRAKG
LQEGEELMPEGAVEETKDGKEGEGGEEAGGVTPDQMMAAQMESMGFSANA
IARALFAVSNAGVEQATAWLFEHLEDANINEPITLSSSSSSSSSTKGPAA
AEVGNLAAMLGFTDEQAKAALTATDGNMERAADWLFSHADDLAGAVAEVL
GNVTGVGGKDEGGEGGVEYSDGEGVYRLVGFISHVGKNLGSGHYVAHIKK
DGQWAIFDDQKVAASEAPPMDLGYLYVYRREDAMDV*
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Synonyms
Publications