jgi.p|Nanoce1779_2|591420, gene_5112 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|591420
Unique Namegene_5112
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:492051..496898 -

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Properties
Property NameValue
TranscriptId591506
ProteinId591420
Product namemethionine synthase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:492051..496898 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0050897cobalt ion binding
GO:0008705methionine synthase activity
GO:0031419cobalamin binding
GO:0046872metal ion binding
GO:0008898S-adenosylmethionine-homocysteine S-methyltransferase activity
GO:0004156dihydropteroate synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0044237cellular metabolic process
GO:0009086methionine biosynthetic process
GO:0009396folic acid-containing compound biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02200NO11G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591420mRNA_5112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|591420mRNA_5112Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|591420

>mRNA_5112-protein ID=mRNA_5112-protein|Name=jgi.p|Nanoce1779_2|591420|organism=Nannochloropsis oceanica|type=polypeptide|length=1280bp
MTSDAPSPDLAPDYPRFVRGRDSTLAYFHKLFRERIVIYDGAMGTMIQKH
RLTEEDYRGERFKDYHKLVRGNNDLLTLTQPTIIKDIHRKYLKGGADLIG
TNTFSSTTIAQADYDMESLAYELNVESARIAREVADEVSAEEPERPRFVG
GSIGPTNRTASISPDVVDASKRNVTFDELDEAYYEEARGLIDGGCDFIII
ETIFDTLNAKAAIFSVRRLLKERGMEETMPLIISGTLVDQSGRTLSGQTT
EAFYVSVRHCNPFCVGLNCALGAKQMRPFLQRLSKVAECFVSVYSNAGLP
NAMGGYDDTPADMAADNSVFVKESLVNMIGGCCGSTPDHINAIAKMCEGV
PPRPVHERVKHMWLSGLEDLVVSKERFQFLNVGERCNIAGSPLFKKLILA
GDYAKAMDIAKKQVEDGAMVLDVNMDEGLLDGLAAMQRFLKIAMTEPECS
KVPIMVDSSKFEIIEAGLKWVQGKCIVNSISLKVGEEEFKRQAAVVKAHG
AAVVVMAFDEEGQAADEYNKVRICKRSYDILVDEVGFPPEDIVFDPNILT
IATGIEEHNNYAVDFIKACRTIKEVCPHAKISGGVSNLSFGFRGVNVIRE
AMHSVFLYHAVQAGMDMGIVNAGMLQVYSDIPPDLLQIVEDAVLNKHAEA
TEALLERSMVEREKALANKGQATAVQAPWRTLEVQARLTHALVKGIDEFI
DEDVEECRQLVPRPLEVIEGPLMSGMNVVGDLFGSGKMFLPQVIKSARVM
KKAVAYLLPFMEKEKEEKMKEQGIEAVADDDSAYAGVVLLATVKGDVHDI
GKNIVGVVLGCNNYKVYDMGVMIPCEKIIEKAIEVKAQVIGLSGLITPSL
DEMVFVAKEMSKAGMTVPLLIGGATTSKMHTAVKIAPNYSTVEHPCIHVL
DASRSVTVVGSLLGEDKEEYVQDVLDEYDELREEHYAGLEERHLKTFDAA
KKLGFNIDFGASPPVCSPVGGTGVKVVDYYSLEDVVPFIDWNPFFQTWEL
RGKYPNRGYPRIFNDENVGEEAKKLFADAQALLKDLVDNKRLSLRGVVGV
FPAARVGEDVEVYASEEAKDRGEEAIGKFCMLRQQQEKESDDAYFSLADF
VASKESGHKDYLGAFAVACFGAEEEVERYEALNDDYNKIMVQALADRFVE
AFAEALHREMRMKTWGYAPEEELDPEDLLKIKYDGIRPAPGYPSQPDHTE
KVMMWELLKARELAGIGLTESLSMTPASSVSALVFAHPESQYFAVGRIEK
DQVEDYAVRKGMVVEEVERWLAPILNYDRD
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Synonyms
Publications