jgi.p|Nanoce1779_2|51836, gene_5037 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|51836
Unique Namegene_5037
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:298339..302252 -

Link to JBrowse

Properties
Property NameValue
TranscriptId51922
ProteinId51836
Product nameDNA primase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:298339..302252 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006269DNA replication, synthesis of RNA primer
GO:0006304DNA modification
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003896DNA primase activity
GO:0008270zinc ion binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01540NO11G01540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|51836mRNA_5037-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|51836mRNA_5037Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|51836

>mRNA_5037-protein ID=mRNA_5037-protein|Name=jgi.p|Nanoce1779_2|51836|organism=Nannochloropsis oceanica|type=polypeptide|length=1089bp
MMPATRNDLLLGVMLLLVAAVEAFQLRPPRVSANAITMGRPCSSSSSSGS
FLYTQPTTPPPTQTFRLHAAADGKDVVELVRGSVVFSDVVKQHVDLEDKG
DGQWMGCCPFHDDNSPSMSVSDEKGVYHCFSCGASGDVFKFVSEKEGMSF
LEAVEYLAEEGGIDIVKEGWKGGGGGASGAIKEGHMRLHKALEAASEYYA
SMLGEVPGGLARTHLLEREISARLANEFTLGYSPATAGGLLQHLRPLKLT
EDELVKSGLFASWSVEAMKANRAPSDRMGGRLVIPIRNARGQMVGFSGRL
LHEGERSAKYINTPETPIFKKKNVLYGLERARARMRKDGVAVVVEGYFDV
MALHGADVKNAVACMGTAISVDHVKALRNALPSSGGTVVLVLDGDAAGRK
AAERTCLQVLLPLEVEGKMAGLHVKVAELPQGEEAKDPADLVRMYETKWG
KGQAGVVFHQEVLGPAVLWKEWYARRLMAGEGDTARRSSSSSSSSSDSTI
ARADAAQFSKRSEALTDFLARLPPTQQADRTFLSSLLAKEAFPENEALRE
RVTNDLLQQCDEKHRLFMKRELERQQQQQVVKQQQQSQPPLQSRQLQQQP
SRSQPSRPQQQQQRSGMLRPLQLQQQISPYPPEWTRQAGVRHSPSPSSSF
SSFSSSSPSSSFPTSQPAPVHGTGFKNDELRPRSLQAPAAPKAATASPYS
SLPSSSSSSFSSSFSSPSTSSSFGDEDNKAILIYEQSVLELLIADPRALA
RVRDFLWAGSSSSGGGSSSTSNINSNPAVHSYQQHPQRPQELILSTHAHQ
VLFDWLMNIEDRRVFANSASSSSFPPSPAAFSGGSHGIGLLKQQFEREAP
AYRELLVYFDRSVARVTPHTAENLQAILRSALKFLVEVTVARRVEEETQR
WQGRLSHLDRLTATNQYGSEQQHQSQEQEQQLQQYQQYQQYLQQQYEQSE
RRPSPFVQSTYPQQGMSFYPSWQQQQQQQQQQQQQQQQYYRQYQQPQPQQ
QPQQQPQQQQQQHRQAQPVGGMLSPRAYETQPRPRWPSEMREGDRAGTGG
PGIPSYQQQQLQQQQPQQLPPQAQAQQQYRGSPPQNRL*
back to top
Synonyms
Publications