jgi.p|Nanoce1779_2|47052, gene_4935 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|47052
Unique Namegene_4935
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_12:68128..71465 +

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Properties
Property NameValue
TranscriptId47138
ProteinId47052
Product namehypothetical protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:68128..71465 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0016246RNA interference
Vocabulary: Cellular Component
TermDefinition
GO:0016442RISC complex
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL010ncniL010Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00670NO11G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47052mRNA_4935-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47052mRNA_4935Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|47052

>mRNA_4935-protein ID=mRNA_4935-protein|Name=jgi.p|Nanoce1779_2|47052|organism=Nannochloropsis oceanica|type=polypeptide|length=932bp
MAEGNAIVKAVVSGDTVILQGRSTGGPPPERQMSLSSLLAPRVARGPTMM
GQEEPWGWASREFLRKLCVGFPVTFKVDYRVPTLNNREFGTIILNGESLN
KTVVKEGWARVRIPRQGNEGEASPELEELQQLETEAIAEKKGIHSGEMGE
GAIREGVQWGPEVDSQAVLQRLKGKTTKMTIEYVRDGAAFRAIIPDTHTY
INLSLAGIAAPRVNTQAKTASAAGEGGAAVAPKPEAYALESKYFTETRLL
HRDVDVVVGGIDKYGTLYGTIIHPKGNISLELVKAGLARVVDYSIDFTAR
ENAMQYRLAERQAKLNQLRIWKGYTPPTITGSKEFTATVIEIVSGDMVVV
KVEGGKEEGAERKLSLASLRAPRGGNVKRGEAGEPWAAEAKEFLRQKLIG
RSVVVVVDYEREIPVGERKEKRAYASLYVGKGTKKKSVSEMLVGEGLAVV
MRHRDEERAENYDDLLMAETTAKGGKKGMYSGGAAPPPPRVTDLSLDAKK
ARSYLPHLQRETDVRAVVEYVFSGSRFKLFIPSENCSVMMGLASLRTANP
FRGGAGGGGAADKNARAGDPFGEEAKRFTRQHLLQRTVEVSLVDMDKNGV
AIGNLYVLGGSGERTPYGLELVKLGLARVDDRGTSSLPVPFVHALHQAEA
AAVAAKKGMWSVEVAEAEKEEEEVTAAQSEELIEVSVSEIVDGVHFFYQQ
ASNTEALTKVTEKMKALTAAEGTVGGGSKLAFEPRRGNIIAALFNDGSAP
LWYRARVEEKIPAAAGGGFKVLFIDYGNTAVVKPEQVRTLDGTNTSIPPQ
AKEAKLAFLRAPGLREEYGEESAVAFSRLAYGKLLRARALGVEGGKLLVS
LQEGGEEALPASKAKTLNQALVEEGLARVSKRAERTVKKLGVAAAVALVE
ELKGAQEGARRGRVGIWRYGDVADSDDEEGF*
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Synonyms
Publications