jgi.p|Nanoce1779_2|589297, gene_4490 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589297
Unique Namegene_4490
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:727280..733984 +

Link to JBrowse

Properties
Property NameValue
TranscriptId589383
ProteinId589297
Product nameActin-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:727280..733984 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00680NO09G00680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589297mRNA_4490-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589297mRNA_4490Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589297

>mRNA_4490-protein ID=mRNA_4490-protein|Name=jgi.p|Nanoce1779_2|589297|organism=Nannochloropsis oceanica|type=polypeptide|length=1667bp
MMEGKQTEAPACNPIEILDLIFYICQDPHKASSPDVRRRMEGLTRERGGG
RASSVGVVSEMEALQQAMERLREKMRRGRLELAEAKRVNLALEETNRARA
VGALEQAEEAASMAQKLQAAYQMHEDLKEEVLAGYNKMKQDEEAKRNALN
CELLAVEDKCKMLREESNQSKEREEAMRIGMVAVQEELARFKSVQQQCSR
LPEEVGGSDTTLQNMKANEEALRSEVAMAQAEIMRMKAEQKTMLHASHHR
DVSLVTEIQAREAALKEALARAIEGMADRQAETEGLRSELLSLKEEQAES
MSELEKARAETQVLQIEVSKAKEESSRWREEAEAALGTSSSRAALSSAQQ
DSLKAELLSMQRELARMKEAGEIAQRKAITKLSTVELAFATAQEELERLS
EAAEAAQKESKERLTTMMGLEKRENALAVDLEVAQEEIVRWKDAAAAARA
EAAEALSREKGTLAAQLQAAQDELSRWKEATGAAQKAASESSASLEEVQF
RELSLIAEVEAAQGELTRWKEEAKAAQNEAAGMSMTLADLDAEMNNAKSE
LARSRAAAESDLEESSSKLSSLEASLGEMRSRQAAVVEEGVAMKAALAKS
QAKEKSAREKIAAVREQSGKELSVVKASLKESQEQHALLETKLVALKQEL
TRWQKAAEDAKGEAAKIASSVTDLKHDVTTATAEAIRWKKEAERARVEGS
SQQASLQAELSSVQQKFAGVLEGEGKNQILQMESKARIGTLEAELAHAQA
KLARSQSSAESDMDGSSSKLSSLEASLAQLRAQEAARTKKMAAIQAKLVA
CQAKEQTAQKENAELREAAKSGLCSLAASRDSVKAELVSVQKELARSLKA
ARAAQKEAAENLTALTELQARQAELMAEVQSTKDELARWKTEAETARIEG
KSQEALLQAELLSVQQELSRIREDAEAAQKRAAEKSLSLDELRSREAEFV
AQMDAAQHEMVRLKEAEIVQMDGISSRDGEVKSQSMLTEGDANIEVLNDR
SAQWNEVAGTVHVGEGADSQLPPVRIRMLEAEEGLAQVESSSKLTLLGAA
LAEARLREAAAVKEALLIKEEMTESQASAQAAREEIAALRYQTSKKKSSL
EAALAETRKRAAALEVELTAATEELTQWRVEAKSAKEECIVLMTELRKLK
GNSKEVDQGQKLQLESPSVLIMRQPSTCPQGVPDRFFLVEVGSWRIRAGW
IEVERPEIFNPTHFPCVVARPKKVSADFSAIVQNASIQANAMYARFRRDG
IFVGKDAWYCALDHPDPVLRGALKLEAPIVRDRLERPADLKWLLRDVLDK
MNVDAGQSPIVVTYKATTTLEERAKMVEIMFEACEAYSVRFLNESSILSS
LAKQVTALVIDVGEDTTRVVPVFEQVVVTKGIQTSALGGSDLTNYMSHML
LSCRNEVYSSLVERKMLEVARWIKERHAYVALDFKEEIGRHGSFEQEKID
VMKFQRDQIKTEESAIPGRRLNVATVAEPEELSEDSGGLNENGVIFRSPL
SDGQELTLRVGRERFHCGELLFRPELFPDIGSSLGMTDLVLESLRNLDLD
LWSSMLPHVLLAGQTSRIPGFAERLMAELKATLPEEYAALVNVRMLEGGN
ASGENGGEDRNQDPLSPIYRDIPAVSRAVAACAHKVVQGEEGWMSADAYS
DFGAEALEKPVYSFIP*
back to top
Synonyms
Publications