jgi.p|Nanoce1779_2|589261, gene_4482 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589261
Unique Namegene_4482
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:705102..709712 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589347
ProteinId589261
Product nameSodium/hydrogen exchanger family-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:705102..709712 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006885regulation of pH
GO:0006813potassium ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0015299solute:proton antiporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G00760NO09G00760Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589261mRNA_4482-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589261mRNA_4482Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|589261

>mRNA_4482-protein ID=mRNA_4482-protein|Name=jgi.p|Nanoce1779_2|589261|organism=Nannochloropsis oceanica|type=polypeptide|length=853bp
MGGMRGYHLAVLLALLVVSGGWAFLLKPLPLPSSFAASLTPKRRGLDTST
SRGGWVSSSSSSSSITSSISVDSRGWRSNVYASKDLENQQEKGFRSFIRR
FSQKALAAQQRTAVRVEAYSQRRRARRQLAAQRIVGFFTAFFRPLWERAA
SKKAAAVESSFSPSSSPLSTWSGMKAATAAGVPLAMIAATTVAAQQPAFQ
KRIAKLLQSSIKNFVHTFEGPRRDTLVLLLSTTLVVPIMTRLKTSPILGF
LLTGMILGPRGLSVVNDIKTTEALAELGIVFFLFEMGLELSVERLISMRR
DVFGLGFAQFSFSAVAIFIISRMLGLPGPTSVVVGGALALSSSAFVLQLL
RDKDSLGTRHGRASFGVLLFQDLAVVPLLVVTPLLTAGGGSAMAWAMGWA
ACKAGLAFAVILLFGKYLLDKIFNFVANSKSHEAFLAVILVTVLTMSNLT
EGLGLSNTLGAFLAGVLLSETKYRYQVEADIAPFRGLLLGLFFMTVGFEI
DIELIRSQFPTIMGLLGGLLMLKTTILTTLCLAFGLSLSNAQHVGLLLSQ
GGEFAFVAFGMAKALGILAPPMAKLLLTTVALSMAVTPVLDEMGNAISER
IENKYGFSHYVGADAEGEVIKATQSDFVVVCGYGRIGKMVCDLLDKKFIP
YVAFDVNPAKVIEARNRGLPVFFGDVSRPEVLRSFNVDKARSVVVTTNDM
SSTNKAVVTLRKLYPKMPIFARAADMAHQKRLQNTLEVSAMVPILPEDSV
LLSLPFGGRVLRKMGVSPEEVDLMMDDMRKNALSDIFGVEEDSEGDEIIG
VIQTIKKKGAIATQVLSQQQTPKDVLQLKEQQQQAAAAAATTDGMTATPQ
PV*
back to top
Synonyms
Publications