jgi.p|Nanoce1779_2|541766, gene_4438 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|541766
Unique Namegene_4438
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:598706..606510 +

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Properties
Property NameValue
TranscriptId541852
ProteinId541766
Product nameputative DNA polymerase epsilon catalytic subunit
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:598706..606510 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0034061DNA polymerase activity
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006260DNA replication
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G01170NO09G01170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|541766mRNA_4438-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|541766mRNA_4438Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|541766

>mRNA_4438-protein ID=mRNA_4438-protein|Name=jgi.p|Nanoce1779_2|541766|organism=Nannochloropsis oceanica|type=polypeptide|length=2326bp
MSKKGDGGSGGGNGSSSGSNVGGGSIGGTGRRATGRNYASASQAARLQKT
KTASASRFRARQAGDEFDARFGYSRFDEGPPRLGWLLDISATTVPDEEGR
ERSGLDLYFLQQDGETFKVTAFYEPYFYVGLRDDRYVAEVTQLLQRKFDQ
VGMTIVACDKEDLDMPNHLSGKLHRFLRLSFSNVSDLMEVRSVLMPLVER
NKQRMAVSLAGGGTNGGGMDGSSAGGGAGRPPDDFFETLVDIREYDVAYV
VRVAIDLDLRVGAWYTVTARGEHVSLKWERDIIEKAEPRVLAFDIECTKA
PLKFPDANVDQVFMISYMVDGQGFLLINREVVGEDIQDFEYTPKPAFSGP
FKVVNLADEAALLREFLRHVQEIRPQIFVTYNGDYFDWPFLETRLQAQGM
DMSAEIGVAETQGEYRGRAAVHLDAFHWVKRDSYLPQGAQGLKAVTKYKL
GYDPVEVDPEDMVRFAHERPTEMASYSVSDAVATYYLYTTYVHNFIFSLC
TIIPMKAEDVLRKGSGTLCETLLMVEAFKGNIVCPNKQVDASLQFYKGHL
LENETYVGGHVECLETGVYRSDLDYKFRLVSSALQGLIDNVDRDLRFAVE
VEGQAKVEDVVNYAEVKAQIVERLADLRDNPLRDEPPLIYHLDVGAMYPN
IILTNRLQPCSIVDQSDCAACGFNQEKNQCKRPMKWVWRGDHLPATRSDF
EQVQTQLAYERTSTGEAYHSLDRAEQTKKLRERLKLYSHKVYKKNKVTAQ
EEREDTVCMRENPFYVNTVRAFRDRRYEYKLLTKKWKGAKLRAEAADDAL
GRKAAEDKETVFDSLQLAHKCILNSFYGYVMRKGARWRSMQMAGIVTDTG
ARLITQARELMEQIGRPLELDTDGIWCILPVSFPENFTLKTATGRTIPLS
YPCVMLNADVHERYTNHQYQDLVDPATHRYATHSECSIFFEVDGPYRCMV
LPSSTEEGKLLKKRYAVFNVDGSLAELKGFELKRRGELELIKAFQGQVFE
CFLKGGSLQECYEAVGEVANYWLDVLDSRGEELDDEEVVGLISENKTISK
TLDQYGDQKGTSLTTASRLADFLGPDMVKDKGLNCRLVIANRPHGAPVTE
RAIPTAIFSTEPGIRKHFLRKWLKDSAMSDFDIRSLVDWEYYKERLGKSI
QKIITIPAAMQKVPNPVPRVLHPDWLEKKIRELTDGYRQLKISNLFAAGG
GEGVDATPSQARPVLLDIEDSMGGTRGGSGTTSKPRTAVVRRIARGAKGG
DGGEDENDENEDSTNIGGETEATAAPTAAAMPAARKRCPAIGEDFQGWLA
FRKAQWREARRERRLETRGRRAVVGSRRFRDGEGGELTIGGAPKRQNVAS
FLKSAALAVTQGCWQVIEIRESEVPGEFVVWAMTGQKSLQRLHLKVQRTM
YITSDVEDEVGFQKIRGRKVNRFLPHGHRSPYIYEVKMDERRFLSNENNL
ARWLSTAGVTGVYELQTPLWFRAITKVGCLAQLSSRYGAGGKKSGSRAFQ
LEDLESLSTVSMPYLHPSTAVFRNVYMYISQSARRAVIALFILGGDNRDL
EPQDGQPAPPPMHATAQVWLANPFSSAETRPPLKRFFARYAPPGVTCDFS
SAYVASLNSALAQLNAALASYLQERHGPTVVFSQSVLDLSILRRYVPALN
DMPVVSMPSNADDNRYPALSWQSYSTQRMIQRFLCMPAWLQDRLEAARYS
HLPLGNLGADTQRTMADVFFGRLLDGNRHVLWASESTRPDLGGAEDDEND
AWADEATNPVIRVPGAYRKICIELEVEGLAVLSMLSAAELEEMDGTQGGL
GMGDVMMGGGGGGVTEGGGDDRACAGAFRLLRALVETWMGEVEKMGSVQA
DALATNYWRWMCDADSLFHDPALRRLCLMLMSKYFHRLVAEMRRLGATVI
FANAQRITIATDKEDMASAYEYASFVVRTVLSRRVFSRLQITPVRYWWQL
LFYDEHNYGASQSNSRRRRVVQEEEEGEEEEEERKEKEDKANQKDYDLKS
HWDLLNYLPPALRHPFDYVVATVLADYLREERERRQDRQERLAVLGDRLL
VGQEDGDDGEEGGEDSEDGHEGSMVKFLQKLVEGRLTRTLLRMVQDIDNE
LRGPECFPVMVGSYKHLSRPALEFVKVVCGILKLDPAVEEQVMVLRRQLL
AQLGVKEFSEEGLSADYCRSFVVPDLICAFCSHCRDLDLCRDEQLLGEDP
DQWWRCPHCANRYDVDRLEQLLIAAVQRQITRYALQDLRCIKCRRVSTLL
MNDVCKCSGRLVGDELPLKFENLVATLRRVALHFSLSGLKEAVEFALRIA
PEDEVQHDLQDLQQQFQQAQPFESN*
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Synonyms
Publications