jgi.p|Nanoce1779_2|588713, gene_4314 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588713
Unique Name	gene_4314
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_10:273597..277600 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588799
ProteinId	588713
Product name	putative NADH-dependent fumarate reductase
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:273597..277600 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
GO annotation for N. oceanica CCMP1779 v2	2020-03-30
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009228	thiamine biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL021	ncniL021	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G02340	NO09G02340	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588713	mRNA_4314-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588713	mRNA_4314	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|588713

>mRNA_4314-protein ID=mRNA_4314-protein|Name=jgi.p|Nanoce1779_2|588713|organism=Nannochloropsis oceanica|type=polypeptide|length=1267bp
MTSLVDGRAAASEVVAPMVLRKPTPGTGAAQAAGRPDPLISMDGDELKKV
LQTVSGTRGSMHFVAKVVAKPEQSNDIHVLVDGVLSRAEQVFSLWVPDSE
VNRINKAPRAEPIELSEDMSGVLSAVQKLHGLTKGVYDPACFPLLQHYKQ
HLKQSLRGFDVSSLDNDPQAAAIAMYANWGAFILAKDSKTLTKAHDAAGL
DLGGIAKGWAIDQCVDALRKAGFKDIFMEWGGDVRVSGKHPTGRPWTVSV
TEPPSMQTLHRTIPTPSSLQRQESLRRMSVSSGMGPSPRGGPGLALPGRR
SMEMQETEAALSEQMASLNCSDDEFRKVLANIPLRDGASITTSGDYMQVF
WVGDRLFHHVFQSKTKRLMEVSTTGLAQTSVVTDGPCMYADALATTALAM
GAVPKNARKFLDTVSPLSGGAPVTDYLLYVRDGPKVLRRRVRGSEDETAQ
EIRLSQHKPARVIVVGGGLAGFSAAIEAAKSGARVILLEKESRVGGNSAK
ATSGINGWGTLPQAREGIMDEEKYFERDTFRSGKGGMCDPSLIRVLSTQS
AEAVRWLMDDLGVDLAELSQLGGHAFKRTHRARPTPSGDPRPIGWLIMER
VQAFVKERLPPGQVDIRTSARVVKLEVEGNHEAGRCAASLPPLKTVTGVT
YEDMTTGKIQTLSADAVVLTTGGYGCDLTPNSLLKEHRPDLLGSEANGNG
GNGDKSSNVSNGKGLNRLGMPSTNGAFATGDGVKMGLALGALTVDMDKVQ
LHPTSFVDPKDPLNPTKILGPEALRGSGGILVNHEGQRFVNELDLRSVVS
NAILKQCQTFKCKDGQEGNIFAWCILNQEAQKKFGSSSLRFYKDARGLFE
GAKDFPTLAKEVIGCDPEVLKATLEEYAQAASISVDVRTRKNAFPCSFSW
TDTDLLAARVTPSIHYTMGGLRISAATEVLEDAQMDQGNLYRKLRPVRRL
FAAGEVTGGVHGANRLGGNSLLECVVFGRLAGERAGTVKQKQSTCLVEDE
WTPVTFREMLQTDSKYGINTKVFRFHLHGALQQAGLAVGQFVAIRGELDG
EWLQGYYSPLSRPHEEGYVEILCRTDTAGGQIINFLNAVRPGGECYLKAM
GGLRLRFEGSQLFHGEREIKKLSLLAGGTGIAPMIQIVRAYLYHLVGAGA
PSGEPLLDPTTSGVRLVYASEQEFDLAFTDVLQSIQDTYPAYFQYYIVLN
HPPLGWTEGVGFVNEDTARRKLFYPYEEEQGQLFVMCGPPIFEMVMGEML
VKIGVPRHAAFAYSNP*

Synonyms

Publications