jgi.p|Nanoce1779_2|630161, gene_4273 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630161
Unique Namegene_4273
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_10:163335..170742 -

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Properties
Property NameValue
TranscriptId630247
ProteinId630161
Product nameSNF2 family N-terminal domain-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:163335..170742 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL022ncniL022Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL021ncniL021Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02740NO09G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630161mRNA_4273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630161mRNA_4273Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|630161

>mRNA_4273-protein ID=mRNA_4273-protein|Name=jgi.p|Nanoce1779_2|630161|organism=Nannochloropsis oceanica|type=polypeptide|length=2199bp
MNGASTSTGTVGGSWVTQDRLLQLLTASPQHATMAAGRLVDMAKDFSATS
SSTSSTTNSTPQIDLLWRIAGFLFRKRWETRVTAALALENVASVMDPAEL
AQCLFGISSSSTSTRDTGSSSRSTSGNDQDNATPVVAESITSTLPVNVGL
LRFASLDMTRVLADGEPLVASTGEEYELGRARECLSREELERQKVEIVKR
LGLLEVPDDAKTRRALARLKDGGEDQLEGCYGIGDEDLLSREEGKEIDED
SSRMIVLQHRRKRNVREIVSGGGDGKAASLGGSIRKIPTTEEATNATLPG
DIHHHHQQQQQQSLPWLAEHLSVRLFDALWETRHGAVLGLTALFKAWRRR
GKGSQQQQQQQQEEEEEEERGNVSLPLTAMNRWLEEWGEDVACRCLCLLA
LDRFGDYSLGTTVAPIREVTGQLLGLVLLVGKGQGKNGEDNMEEHHAGHF
EAVLEHVKTLIGPLQQVKRNAGAGEGECDATAVASAAAAAMNVPMTKRKR
ARQVTTTNTSLPFSSKTSSSVMTWEVRHGGFVGLKYLVALPSRQVLFRTL
VLLQWATEGLNDSVEDVREAAATAGLSLLQALKGQNRQRGATAEVTAADL
ERVLWPVFQALMQEGGREEEDDTSMTTIDSPSQVRTRAEKEEGVSPKVDS
PFSHPCNAVACAPYLATFFRLANQALQLLEPYLPGNDITHCFGKMDEESS
NIDSSRSRDSNRNSNSSRHSSGSSISRSRYSHLALGHPGPPSKIKRQSLP
IPRSPFPFTPAHVISHLFLVGTRTSEPSIRAPALELLASVVEYWGGVRIR
CENAKKYGWRRNLITFEASKRLNQVTLPAMAWKVLAALADGLKREKNEKN
EEGPSSLMTSLINVWKAMVAALSPLVITTMVGPITNAYLYGDLEYDIFPL
TSLREDCAAIQRVVPALVVMVKQKVIGEDIKSVEREAVIEGMALEALRRR
DGSSEKAAFLLGQLFGEGCGEFGRGKREEHEKKVKMALWEVLVEESRVYY
PAKYKGAVGQPAMWQMRRLMLATAVALVQGAVDVLEGGVLAVEKPGLLVR
ALMESVKEEADKERRALAAKWLMCLGVSPFEHKQECLEKEKKGETAFEKA
MRNLCVLACHKGENLEYPFGRVGAREALKQFAVRISDTRCGEIMHRFWHS
LYMSLAHRSRGVSGGLYDTDSEEEEEKEEDLWSNEKESWRNSFSFTVEDA
IRLVMIMTPVVQKDLLSRFARYVPSLLQRACMDEDRDHANTKLVNLLAAR
AARNIFKQLPPDDLPHLARQMAQMLHYYLRKRRTQREENRRVRAAFCVLE
VAKGLREMPHGSEHVKKVLPFLLPVALMTVADDNEEVRLYGAEGFRLLVE
IAPLLKAGEWAVGEIQEQQQRQQQQQRVKAAIDVEQDSEKRKKAKRVMRK
ERANASFVACQNTLLHLLLLGNKARAHIIEGPAQALPAAAIAASAGPTRI
DRRILTLPDSLSSCFRGGLVLRPYQWEGVMWLTLLRRAGLHGALCDDMGL
GKTLQALVAIAVARCEEDAEESEEEGGENSASSSSSHLPSLVLCPASLAG
HWDYESRRFFSAETIQTVLYAVGLSPKDKASLIAGLGKRHLVVASYDMLR
RDLARSGGGGGGGGGRGLLTGQAWKYVIFDEVHVLRSGQATVLGRAVKAL
RAQHRLALTGTPLQNQVHDLWGVFDVLTPGLLGTKVMFETEYGRPIGKAT
LKNASADATAEALGKLERLHAHLLPFLLRREKGKVLKDLPPKTITDLACD
LVPLQIEMYEGHCHTEQAQSVLEGLNLMLRNGGGEKEEAGMAAGREVKQQ
LGGQALRLLHYLRLLCVHPALVLQAGSAAREQLIEEVECSGKMVALQNLL
FACGVVKDFQEGEIEEGDGDEGGEDEEEDMEEEKEDVDRGHKRDENKMVE
EEDTVVTFSLPSPPASGPQPPTADAAPNSTSADINDDLHRCLIFAQHRVT
LDAIEKSILRRAQWNPAYAEQENDPTSITSNSGSSGSNGKSRVPATIAPG
TRYLRLDGSVPSGQREELVQRFNRDRSIPIMLLTTRVGSLGLNLTGADIV
IFMEHDWNPAVDLQAMDRSHRIGQGRPVNVYRLVTKGTVEEQVMALQRRK
RGLADAVVTERNAASFEDRGGMSSVLDFVAASVGMGGGGVRGGFDGDVTI
GFGTGDASDAPSLSSATGVGILSEEAWGEEQYSTFAVERFLAEIVRDG*
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Synonyms
Publications