jgi.p|Nanoce1779_2|586863, gene_4186 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586863
Unique Namegene_4186
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:1070955..1078941 +

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Properties
Property NameValue
TranscriptId586949
ProteinId586863
Product nameABC transporter transmembrane region 2-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1070955..1078941 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0000166nucleotide binding
GO:0017111nucleoside-triphosphatase activity
GO:0005524ATP binding
GO:0016887ATPase activity
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00330NO10G00330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586863mRNA_4186-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586863mRNA_4186Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|586863

>mRNA_4186-protein ID=mRNA_4186-protein|Name=jgi.p|Nanoce1779_2|586863|organism=Nannochloropsis oceanica|type=polypeptide|length=716bp
MAVPYFKEETAAKVLLASVIALTLTSSGVSVWFSYIGRDFWTALSTKNEP
EFYRMMRTFFGALVVGVPVNVMYRYYRQRLSLSWREWLTGRITDLYYANR
VYYTLEASKEIDNPDQRIAEDIRAFTKDSLEFFITALTAVIDLVAFSSIL
FRIYPQLFIAILAYATVGTLVTTTVGRRLVGLNFLQLQREAFFRYSLMRV
RENSESIAFYGGEMLELKEIRRRFTAALDNYRDVIATQRNLEFFTVSYRF
LIQVIPGLVVAPLYFAGKVELGVVSQSYSAFNHILSDLSLIVNQFEALSA
FSAGIDRLAEFLEKIQSANRGRMGLSSVKGTSKEQMRDLRTILSQAFIDE
LQAGQRRAAGEGGENVDLMGGGRSESPLPPTFTTTASLSITGESVPLVRG
SGRGSGAAALASAAGGGVSGAVSSGEGGEDRPSTVDVTIQPGAALQLEGV
SVSTPDYRRMLVQDLSLRLPSGGRLLIVGNSGTGKSSLLRVMAGLWDSGS
GKITRPSTAEMFFLPQRPYCTLGTLRDQLHYPKKPPSNSSSPTSGIIGSS
GHGLSDLAQENEELLSILEAVNLGDLPLRMGNGSAVDGLDVMTDWSGILS
LGEQQRLAFGRLLYNKPKLAILDEATSALDLNSERKMYEVLQAIPGISYV
SVGHRPSLVDFHDSKLFLSGNGYTLEPLPSLLEGREEVRESSSSSNSGTG
SKGRKAEAGGGGGRV*
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Synonyms
Publications