jgi.p|Nanoce1779_2|665761, gene_4160 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|665761
Unique Namegene_4160
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:989664..995399 -

Link to JBrowse

Properties
Property NameValue
TranscriptId665847
ProteinId665761
Product nameputative chromodomain protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:989664..995399 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003682chromatin binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00580NO10G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665761mRNA_4160-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|665761mRNA_4160Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|665761

>mRNA_4160-protein ID=mRNA_4160-protein|Name=jgi.p|Nanoce1779_2|665761|organism=Nannochloropsis oceanica|type=polypeptide|length=966bp
MSYLHVSWETPSDLIHCVGPSAKASIKRFLKREREGKLEVYNQYDPEEFF
DPQWREIDRVLREKREMSFFGSSSGTKSSNSSINVRYLIKWSGLPYAEAS
WEKACDLALHLDLPRHLAAFQARQIPPQQGRKGEIQGQQQSAAGEGERRV
FRKEDYEIQPAFKGGGQLREYQWEAVKWMVFNWAKGSGSILADEMGLGKT
VQTAAFIHSLWEKHRVPGPFLVVAPLSTLQHWSREFTTWTNLNTVVYHGS
AEDRAVNRDYEWWFEEGKEGGKKGSSSSRGVKTPKFQVLITTPEMCVAAD
NHHLANLDWAVLVVDEAHRLKNTNSRLSLTLREAFVYGSALLLTGTPLQN
DLQELFCLLSFADPVVFSDLPCFEAAHGDIKDHAALASLQATIRPYLLRR
MKEDVEKGLPPKEETLIDVELTGVQKQYYRALYEKNAEFLLGGRKAVDGP
SLMNLCMELRKCCNHPFLNRGVELDIRSHAEATGKVYRSDADLLVEYSGK
LVLLDKLLPRLKEGGHRVLIFSQFKIMLDILEDYLEGRSFSFGRIDGTIT
GDKRQQKIDEYQKPASSLFVMLLSTRAGGVGINLTSADTVIIFDSDWNPQ
NDIQAQARCHRIGQKKNVQIYRLITAKTYEQAMFHKASMKLGLDRAVLHD
LGGVGGGKEGGGREGGKEPLSRDEMERLLRHGAYDVFSEGREGGGEDASR
KFCEEDIEAILRDRATTIVHDSEGGGEGGREGGRAGGGMPGSFSKASFAL
PGVGGGGQGGLGTSVEDPDFWTKVVGLRLAKQGGREGGGGDRRCKMGKKV
YKESVLRGLLMKEGGSSGSDGEGGREGGVDDEEEDDDDEERGAGGRAGGR
KVTVAALNRLMTALQKYGYVSTEPGRETSKKRWAMLGEEANFPARHHPKL
PSIARYVLSLLVRASARQRVMDARAAVEATEAKKRAAGAAAAATAATAAA
VAVGLDGRQEGRRKH*
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Synonyms
Publications