jgi.p|Nanoce1779_2|554095, gene_3939 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554095
Unique Namegene_3939
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_8:445069..451208 -

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Properties
Property NameValue
TranscriptId554181
ProteinId554095
Product nameputative DNA repair protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:445069..451208 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0003677DNA binding
GO:0005524ATP binding
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL004ncniL004Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G02700NO10G02700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554095mRNA_3939-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554095mRNA_3939Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|554095

>mRNA_3939-protein ID=mRNA_3939-protein|Name=jgi.p|Nanoce1779_2|554095|organism=Nannochloropsis oceanica|type=polypeptide|length=859bp
MSAGRFGIVTRWQHLPCTIFADYLETEEDIEGYEYLNAEQQALVKARVEQ
SRDEVDEDAKPIDPAELVRKEWTTQREPPETLVLPILPYQKEGLGWMYNQ
EQVEYHGGILADEMGMGKTIQAIALMLANRPSKTHIAAWSKQEESHGRIP
NSSMRAGTLVVCPLVALLQWQSEIARFTLDGSLSVLVYHGSSREDVKAVL
QKADVVLTTYSIVESEFRKMMSPEKVKCGECGKRFYPDKLVIHKKYFCGE
GAALTAAQARTQRKGRTVKAMGEKSGGGGDGSGGGKRKRTALAQAGGAAA
SKVGKKKEKEVIHLSWFRIILDEAHYIKTRSTSTAKAVFALTSLNKWCLS
GTPLQNRVGELYSLVRFLRMDPHAFYFCRMKGCECKSLNYRFGPNWDSCE
CCGHTPMWHYAHFNRNILNPIQRAGYIGEGRKAFLTLKNEILDPILLRRT
KETRSEDIMLPPRLIKLRHDPMDEREEDFYQALYTQSQAQFNTYLQNGTV
LNNYAHIFDILIRLRQAVDHPYLVIHSHSRTNTGSEGGTAGPTPMRDGAT
LEEEEEEECGLCHEGIENLVRAECGCGFCRLCVTEYLETSLGGATKCPEC
SQPLTVDLSEKEGQQKEEDEAQGGSGRRTRQSNDDGSSSCGGSRSNGAAN
ANAAGTVVVAGKLKLQGLDRKSILHRIQLENFQTSTKLEALLEELHSMQA
RDPSAKAIVFSQFVNMLDLIMWRMTADGTKCHKLSGHMSVGARDKVLTAF
KEDPDVKVLLISLKAGGVALNLTHANHIFLMDPWWNPAAEMQAIDRTHRI
GQYKPIFATRFILENTIEERILKLQEKKQLVFDSTVGGDAASLARLTVDD
LRFLFSNN*
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Synonyms
Publications