jgi.p|Nanoce1779_2|577140, gene_374 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577140
Unique Namegene_374
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_3:931870..935864 +

Link to JBrowse

Properties
Property NameValue
TranscriptId577226
ProteinId577140
Product nameBRCA2, oligonucleotide/oligosaccharide-binding, domain 1-domain containing protein
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:931870..935864 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000724double-strand break repair via homologous recombination
GO:0006310DNA recombination
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL047ncniL047Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03660NO01G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577140mRNA_374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577140mRNA_374Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|577140

>mRNA_374-protein ID=mRNA_374-protein|Name=jgi.p|Nanoce1779_2|577140|organism=Nannochloropsis oceanica|type=polypeptide|length=1225bp
MSASAAAVAPPLAGAGAGAVSGAGAAMPARVLTFQTGEPQEMSCSKEVWE
KGRNMFDNGKEQPKQHQQLEAGEKEGEMGGGGSHTFIFRTRRGRKMSISE
EAVAKVSNMFDSTDAQGQQEQQEKEEQEQEQYDHQQLSTVMELVTDEERQ
NSMHLPPLLAAQLEREKDDSVHPVLLRPPSLNHLHPPSASLAVPEQPALL
PPPAQCRDLALLDLHALAQDKYGKQRNNNSSNIIDQDRGEGEMDGSYSTF
CSNSEGDKRDEKMHEIVPAARLKLRDLGMYPGSIPQYLLPSYGVRAETVA
ISSTNGHLLRFGPDERGGLPVALLQNFPHPTTADSTFPSQESANLITALM
ASPLCAGTSKASPRLPPSAAWLIHHYRLIVWKLASLERSFPEVLGGRYLT
RARLLQQLQLRYFREMVQGHRSALRTILNGDAPAGRLMVLCVTQIYFEKK
EGGEREVETAATGPEKEDEKERRREGEEGEQCASNPPPPSPPLLMRVELT
DGWYCIDALLDGPLSALVRKGRVSVGGKLALCGAVLKGLSEGGIDPLEIH
GLATEARPHLRLVANSTRPARWDATLGFQRKPLKHVGGMMAVPVSGLVAG
GGAVAAMEVVVLRMYPMMYMERRMNGKGERVSSRVLSVGEEEDAQLRHEG
VCQAEMERLLEEKNREAEEEEREERRQGRGMRENGCVELDLDKVREQCLA
EMSTRMEEARREVLDDPCYRRESKPFIRVKLCSVKSHPFTLPPSSSSSSS
SPPSSYTLTDDFACHSVVVVRRNLALLTVWEPSEALLEALQDGRHLMLHG
VTPPPNKGDGPPPSLFRLNGSGKSTQARLLSSISDNRISGSSSSFGFRSV
FTYARYEPRMVLGSIREAMEKFDHLKGPFISMDFDAVAVKLLSITWEDVR
PRQLETETAGGGKKGKKEDGNEKENSRSSCNSGTVRTRSFFTDSSGCILC
VEKREYDGEGGREGGQSTGENGSKKKEEEEEVDSVYALTDLAFQSYDPKT
DTVMATVSAWSGMRKTIHPRARGEAYLREAMGRASRWAKQTADGPRVLEQ
ERARLLSLLYLNRERGEKERREGGKISPREHFQGSVTHHELVLQGGGEKE
IGERDGTALRILVDLGGHGYLPVLCQRLFAVGRLATALLPIEVARAVGED
VGKVAEAMTQHQVGWGSICLNLLVQCVEGEPPGAPSFELLDVTVVPALQQ
ALKALNSLLVGDAEFALLAASIVR*
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Synonyms
Publications